miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 101823 0.66 0.767329
Target:  5'- cCGCgaGGCCGUCUUcGGugugcgccguugcgCCugCCGCGa -3'
miRNA:   3'- -GCG--CCGGUAGAA-CCua------------GGugGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 101635 0.67 0.704839
Target:  5'- cCGCGGCgG-CgcccgccgCCGCCCGCGCc -3'
miRNA:   3'- -GCGCCGgUaGaaccua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101030 0.7 0.558639
Target:  5'- cCGCGGCCg----GGGUCCcaAUuuGCGCa -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGG--UGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101018 0.68 0.698907
Target:  5'- gGCGGCCAccgCggcaGGcgCCGCaggcuccgccgCCGCGCg -3'
miRNA:   3'- gCGCCGGUa--Gaa--CCuaGGUG-----------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100751 0.7 0.578513
Target:  5'- uCGgGGCCg----GGGUCCAggucgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuagaaCCUAGGU------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100624 0.72 0.472251
Target:  5'- gGCGGCgCAUCgccGGcgCCGUCCGCGUc -3'
miRNA:   3'- gCGCCG-GUAGaa-CCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100376 0.67 0.718594
Target:  5'- cCGCGGCCGc---GGcgCgCAgCCGCGCc -3'
miRNA:   3'- -GCGCCGGUagaaCCuaG-GUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100351 0.7 0.568555
Target:  5'- aGCGGCCGc---GGGUCgUAgCCGCGCg -3'
miRNA:   3'- gCGCCGGUagaaCCUAG-GUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99889 0.66 0.811313
Target:  5'- gCGCGGCUgAUC-----UCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCCGG-UAGaaccuAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99699 0.68 0.668991
Target:  5'- cCGCGGCCG-CgucGcgCCGCaCCGUGCu -3'
miRNA:   3'- -GCGCCGGUaGaacCuaGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99349 0.67 0.708782
Target:  5'- gGCGGCCGggc-GGAUCUugGCCCcUGCg -3'
miRNA:   3'- gCGCCGGUagaaCCUAGG--UGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 99286 0.68 0.698907
Target:  5'- cCGCaGCgCGUCgaggUGGcgCCucaGCUCGCGCa -3'
miRNA:   3'- -GCGcCG-GUAGa---ACCuaGG---UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99119 0.69 0.628732
Target:  5'- cCGCGGCaCcgCUcagccaagaUGGAUucugcgCUAUCCGCGCg -3'
miRNA:   3'- -GCGCCG-GuaGA---------ACCUA------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99027 0.68 0.658949
Target:  5'- gCGCGGCU-UCgUGGAaggCGCCCaGCGCg -3'
miRNA:   3'- -GCGCCGGuAGaACCUag-GUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 98591 0.66 0.791976
Target:  5'- gCGCGGCgccagcgcgucaAUCUccGaAUCCGCCuCGCGCa -3'
miRNA:   3'- -GCGCCGg-----------UAGAacC-UAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 97908 0.68 0.688978
Target:  5'- aGCGcGCCGUCcgccgGGucGUCCGCgCCGcCGCc -3'
miRNA:   3'- gCGC-CGGUAGaa---CC--UAGGUG-GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 97578 0.73 0.401495
Target:  5'- aGCGGCCAgcgccgccgcgUCUUccgaaGGG-CCGCCCGuCGCg -3'
miRNA:   3'- gCGCCGGU-----------AGAA-----CCUaGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 96870 0.66 0.784772
Target:  5'- gGCGGCgGUCcgcgcuggGGAgggaCCGCCgugcuCGCGCg -3'
miRNA:   3'- gCGCCGgUAGaa------CCUa---GGUGG-----GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 96863 0.68 0.658949
Target:  5'- uGCcGCCAcCUgccg-CCGCCCGCGCg -3'
miRNA:   3'- gCGcCGGUaGAaccuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 95297 0.66 0.766399
Target:  5'- uGCGGCCG-C-UGGcgCCuCCagGCGCg -3'
miRNA:   3'- gCGCCGGUaGaACCuaGGuGGg-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.