miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 94962 0.7 0.529212
Target:  5'- gGCGGCCGU------UCCGCCgCGCGCa -3'
miRNA:   3'- gCGCCGGUAgaaccuAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 94416 0.71 0.490914
Target:  5'- aCGgGGCCAugcccgucguggUCUgcgUGGGUUCGCCCaCGCa -3'
miRNA:   3'- -GCgCCGGU------------AGA---ACCUAGGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 94215 0.68 0.658949
Target:  5'- gCGCGGCgGagcUCgcggcGGGg-CGCCCGCGCg -3'
miRNA:   3'- -GCGCCGgU---AGaa---CCUagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 94163 0.7 0.548773
Target:  5'- uCGCGGCgG-CUgcUGGGcgcggCCGCCuCGCGCg -3'
miRNA:   3'- -GCGCCGgUaGA--ACCUa----GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 93773 0.71 0.519527
Target:  5'- gGCGGCCcggccgccgCUUGGcugguUCCGCgcggCCGCGCg -3'
miRNA:   3'- gCGCCGGua-------GAACCu----AGGUG----GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 93491 0.68 0.698907
Target:  5'- cCGCGuGCCgcgcGUCgggUGGAUCCgcacccacucGCCCG-GCg -3'
miRNA:   3'- -GCGC-CGG----UAGa--ACCUAGG----------UGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 92714 0.71 0.500373
Target:  5'- gCGCGcGCCAUCgccg--CCACCgGCGCc -3'
miRNA:   3'- -GCGC-CGGUAGaaccuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 92390 0.79 0.171626
Target:  5'- --aGGCCGUCcUGGAUcugcuguccgccccgCCGCCCGCGCg -3'
miRNA:   3'- gcgCCGGUAGaACCUA---------------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 92210 0.69 0.638812
Target:  5'- gCGuCGGCCG-CUUGGG-CgGCCagcaGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGAACCUaGgUGGg---CGCG- -5'
6365 5' -58.6 NC_001847.1 + 92026 0.7 0.548773
Target:  5'- cCGC-GCCGUCUgcgGGcaCCGCCgGCGCc -3'
miRNA:   3'- -GCGcCGGUAGAa--CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91873 0.66 0.774728
Target:  5'- gCGCGG-CGUCgcagcaggUGccccccgggcgccGcgCCGCCCGCGCg -3'
miRNA:   3'- -GCGCCgGUAGa-------AC-------------CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91605 0.68 0.679003
Target:  5'- cCGCGgcGCCGUgUUGG--CCgcgaggaaGCCCGCGCg -3'
miRNA:   3'- -GCGC--CGGUAgAACCuaGG--------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91336 0.73 0.401495
Target:  5'- gCGCGGCCGUCgaGcGUCaguaguagcgCGCCCGUGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCcUAG----------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 89561 0.68 0.688978
Target:  5'- cCGCGGgccgcgugagcaCCAUCUUGaacagccCCGCCUGCGUg -3'
miRNA:   3'- -GCGCC------------GGUAGAACcua----GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 88676 0.68 0.698907
Target:  5'- gGCuGGCCAUgCgcaaggCCAUCCGCGCg -3'
miRNA:   3'- gCG-CCGGUA-GaaccuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 88216 0.66 0.802613
Target:  5'- aCGCGGCCc----GGAgCCcggGCCCGaCGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCUaGG---UGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 87585 0.68 0.688978
Target:  5'- gCGCGGCCGcc--GGG-CUcCCCGCGCc -3'
miRNA:   3'- -GCGCCGGUagaaCCUaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 87409 0.66 0.784772
Target:  5'- gCGCGGgCGg---GGccCCGCCCGcCGCg -3'
miRNA:   3'- -GCGCCgGUagaaCCuaGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 86603 0.66 0.811313
Target:  5'- uGCgGGCCAUUgcugcUGG--CCGCgCCGCGUa -3'
miRNA:   3'- gCG-CCGGUAGa----ACCuaGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 86518 0.66 0.775648
Target:  5'- gCGCGGCgG-C-UGGG--CGCCCGCGUg -3'
miRNA:   3'- -GCGCCGgUaGaACCUagGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.