miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 57935 0.7 0.578513
Target:  5'- aCGCGGCCAaacUGGAgCagGCCCGCGa -3'
miRNA:   3'- -GCGCCGGUagaACCUaGg-UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 106810 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 27933 0.69 0.588509
Target:  5'- gGCGGCCGUCUcGaGuUCCuCCuCGCGUc -3'
miRNA:   3'- gCGCCGGUAGAaC-CuAGGuGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 69369 0.69 0.608587
Target:  5'- gCGCGGCgGUCUuugcggcggUGGcgCUGCCgGCGg -3'
miRNA:   3'- -GCGCCGgUAGA---------ACCuaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 130515 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61689 0.69 0.628732
Target:  5'- uGCGcCCAUCgcGGuaGUCCAUgCCGCGCg -3'
miRNA:   3'- gCGCcGGUAGaaCC--UAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 19346 0.69 0.628732
Target:  5'- cCGCGGCC-----GGGUCUugCgCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGugG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 11688 0.71 0.509912
Target:  5'- gGCGGCCGUCgccGGG-CCaaGCCCG-GCa -3'
miRNA:   3'- gCGCCGGUAGaa-CCUaGG--UGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 47708 0.71 0.500373
Target:  5'- gGCGGCCG-CcgGGAacgccagcccgUCGCCCGCGCa -3'
miRNA:   3'- gCGCCGGUaGaaCCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 10794 0.71 0.481539
Target:  5'- aCGCgGGCCuguUUUUGGGcuaCugCCGCGCg -3'
miRNA:   3'- -GCG-CCGGu--AGAACCUag-GugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 78094 0.68 0.658949
Target:  5'- gGCGGCCGggCUc-GAUCCGCCUcuuggacgcggGCGCc -3'
miRNA:   3'- gCGCCGGUa-GAacCUAGGUGGG-----------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 39414 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39495 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 12330 0.68 0.679003
Target:  5'- uGCGcGCCAUCga-GGUCCuGCCCGagucaGCg -3'
miRNA:   3'- gCGC-CGGUAGaacCUAGG-UGGGCg----CG- -5'
6365 5' -58.6 NC_001847.1 + 80746 0.68 0.679003
Target:  5'- uCGCGcGUCGUggaCUUGG-UCCGCgCCgGCGCg -3'
miRNA:   3'- -GCGC-CGGUA---GAACCuAGGUG-GG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 83296 0.76 0.250778
Target:  5'- uGCGGCC-UCcu-GAUCgACCCGCGCa -3'
miRNA:   3'- gCGCCGGuAGaacCUAGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121884 0.75 0.288454
Target:  5'- aCGCGGCCugccUGcGAaCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGuagaAC-CUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 144 0.74 0.348446
Target:  5'- gCGCGGCCAUCUUGcuUCCAaacucauuagcauacCCCGCcCa -3'
miRNA:   3'- -GCGCCGGUAGAACcuAGGU---------------GGGCGcG- -5'
6365 5' -58.6 NC_001847.1 + 104496 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 50056 0.72 0.453952
Target:  5'- gGCGGCCGc---GGGUCCGCgCGCGg -3'
miRNA:   3'- gCGCCGGUagaaCCUAGGUGgGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.