miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 33217 0.72 0.463054
Target:  5'- gGUGGCUcggCUUGGcgCCGCgCCGgGCg -3'
miRNA:   3'- gCGCCGGua-GAACCuaGGUG-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 44760 0.71 0.481539
Target:  5'- cCG-GGCCuUCcUGGccUCCAUCCGCGCg -3'
miRNA:   3'- -GCgCCGGuAGaACCu-AGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 89561 0.68 0.688978
Target:  5'- cCGCGGgccgcgugagcaCCAUCUUGaacagccCCGCCUGCGUg -3'
miRNA:   3'- -GCGCC------------GGUAGAACcua----GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 10394 0.68 0.688978
Target:  5'- gCGgGGCCG-CUUuaugacGGcccGUCC-CCCGCGCg -3'
miRNA:   3'- -GCgCCGGUaGAA------CC---UAGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 56878 0.68 0.679003
Target:  5'- gCGCGGCCAc---GGGcCCGCCgGCGa -3'
miRNA:   3'- -GCGCCGGUagaaCCUaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 29427 0.7 0.548773
Target:  5'- uGCGcGCCAgcgagcgCUggggcgUGGcgCCGCCCGCGg -3'
miRNA:   3'- gCGC-CGGUa------GA------ACCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 105492 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 101030 0.7 0.558639
Target:  5'- cCGCGGCCg----GGGUCCcaAUuuGCGCa -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGG--UGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 18444 0.7 0.578513
Target:  5'- cCGCGGCCAgccgUGcGGUgCCgcGCCCGCaGCg -3'
miRNA:   3'- -GCGCCGGUaga-AC-CUA-GG--UGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 15559 0.69 0.588509
Target:  5'- gCGCGGCCGUC--GGG-CCGCggCCGcCGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCCUaGGUG--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 65870 0.69 0.608587
Target:  5'- gCGCGGCgAgCUgacgugGGggCCGCCCauGCGCc -3'
miRNA:   3'- -GCGCCGgUaGAa-----CCuaGGUGGG--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 103717 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 103417 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61689 0.69 0.628732
Target:  5'- uGCGcCCAUCgcGGuaGUCCAUgCCGCGCg -3'
miRNA:   3'- gCGCcGGUAGaaCC--UAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 59179 0.69 0.632764
Target:  5'- gGCGGCgGUCgagGGggCCGucguagcccgagccgUCCGCGCc -3'
miRNA:   3'- gCGCCGgUAGaa-CCuaGGU---------------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 92210 0.69 0.638812
Target:  5'- gCGuCGGCCG-CUUGGG-CgGCCagcaGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGAACCUaGgUGGg---CGCG- -5'
6365 5' -58.6 NC_001847.1 + 94215 0.68 0.658949
Target:  5'- gCGCGGCgGagcUCgcggcGGGg-CGCCCGCGCg -3'
miRNA:   3'- -GCGCCGgU---AGaa---CCUagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 43370 0.68 0.662969
Target:  5'- cCGCGGCCAgcgccgccgacGGAg-CGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaa-------CCUagGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 39441 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 54274 0.68 0.668991
Target:  5'- aGCGGC--UCgaGGcgCuCAUCCGCGCg -3'
miRNA:   3'- gCGCCGguAGaaCCuaG-GUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.