miRNA display CGI


Results 141 - 160 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 7016 0.66 0.766399
Target:  5'- aGCGGCCG-Cgc--AUCCGCCaGCGCc -3'
miRNA:   3'- gCGCCGGUaGaaccUAGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 64786 0.67 0.757035
Target:  5'- gGCGGCCuuuUCcUGGAgCUACUugcaaaCGCGCc -3'
miRNA:   3'- gCGCCGGu--AGaACCUaGGUGG------GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 23031 0.68 0.688978
Target:  5'- cCGCGGCCAcgcgccgcUCgagccaGUCCACCUuGCGCc -3'
miRNA:   3'- -GCGCCGGU--------AGaacc--UAGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 50513 0.68 0.688978
Target:  5'- gCGCgGGCCAggaguUCgcgcUGGA-CCACCUgGCGCu -3'
miRNA:   3'- -GCG-CCGGU-----AGa---ACCUaGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 12330 0.68 0.679003
Target:  5'- uGCGcGCCAUCga-GGUCCuGCCCGagucaGCg -3'
miRNA:   3'- gCGC-CGGUAGaacCUAGG-UGGGCg----CG- -5'
6365 5' -58.6 NC_001847.1 + 54274 0.68 0.668991
Target:  5'- aGCGGC--UCgaGGcgCuCAUCCGCGCg -3'
miRNA:   3'- gCGCCGguAGaaCCuaG-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39414 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 43370 0.68 0.662969
Target:  5'- cCGCGGCCAgcgccgccgacGGAg-CGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaa-------CCUagGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 83038 0.68 0.648887
Target:  5'- cCGCGGCCGcuagugcgCUUGGG-CCG-CgGCGCg -3'
miRNA:   3'- -GCGCCGGUa-------GAACCUaGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 23809 0.69 0.638812
Target:  5'- gGCGGCCAccgaccacugcUCgc-GGUCCAgCgCGCGCa -3'
miRNA:   3'- gCGCCGGU-----------AGaacCUAGGUgG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 43541 0.68 0.698907
Target:  5'- uCGCGGCCAaCacGGcgCCGCgguUUGCGCg -3'
miRNA:   3'- -GCGCCGGUaGaaCCuaGGUG---GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 85275 0.68 0.699897
Target:  5'- cCGCGGCCAagaccaugaUCUugUGGGacagcagcagcacggCCGCCUGCaGCg -3'
miRNA:   3'- -GCGCCGGU---------AGA--ACCUa--------------GGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 108280 0.67 0.747563
Target:  5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3'
miRNA:   3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 34754 0.67 0.747563
Target:  5'- aCGCGGCCGagcUGGcgCgGCUgCGCGCc -3'
miRNA:   3'- -GCGCCGGUagaACCuaGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106386 0.67 0.737993
Target:  5'- gGCGcGCCAgCUgcaGGUCCggGCCCGCGa -3'
miRNA:   3'- gCGC-CGGUaGAac-CUAGG--UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 108748 0.67 0.728334
Target:  5'- gGCGGCgGaCgacGGGcCCGCCCGCuGCu -3'
miRNA:   3'- gCGCCGgUaGaa-CCUaGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 37813 0.67 0.718594
Target:  5'- aCGCGGCCGggcgGGcgCgACgCCGaCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCuaGgUG-GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 64133 0.67 0.718594
Target:  5'- gCGCGGCCGcCguacUGGAcaugCgGCCCGCcauGCa -3'
miRNA:   3'- -GCGCCGGUaGa---ACCUa---GgUGGGCG---CG- -5'
6365 5' -58.6 NC_001847.1 + 34613 0.67 0.708782
Target:  5'- gGCGGCgCGcCgaGGAagUCCggcGCCUGCGCg -3'
miRNA:   3'- gCGCCG-GUaGaaCCU--AGG---UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 118821 0.67 0.708782
Target:  5'- uGCGGUgAgCUUGccuaCACCCGCGCc -3'
miRNA:   3'- gCGCCGgUaGAACcuagGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.