Results 61 - 80 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 5' | -58.6 | NC_001847.1 | + | 103367 | 0.66 | 0.793763 |
Target: 5'- gGCaGGCCGUgUUGGc-CgGCgCGCGCg -3' miRNA: 3'- gCG-CCGGUAgAACCuaGgUGgGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 80582 | 0.66 | 0.793763 |
Target: 5'- gCGgGGCCGUCguccuccGcgCCGCCCcCGCc -3' miRNA: 3'- -GCgCCGGUAGaac----CuaGGUGGGcGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 2941 | 0.66 | 0.784772 |
Target: 5'- gCGCGGCCGcCUccagcgcGGcggCCGCCUcgGCGCg -3' miRNA: 3'- -GCGCCGGUaGAa------CCua-GGUGGG--CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 74153 | 0.66 | 0.784772 |
Target: 5'- gGCGGCC-UCgacGGcgCCguggGCgCGCGCa -3' miRNA: 3'- gCGCCGGuAGaa-CCuaGG----UGgGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 61640 | 0.66 | 0.784772 |
Target: 5'- aGCGGUC--CUUGGccgacaccUCCGCCgGCGUg -3' miRNA: 3'- gCGCCGGuaGAACCu-------AGGUGGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 71554 | 0.66 | 0.783866 |
Target: 5'- aCGCGGCCAcgggguggcggUCgaacacgaGGGUcacagugCCGCCCgGCGCc -3' miRNA: 3'- -GCGCCGGU-----------AGaa------CCUA-------GGUGGG-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 51699 | 0.66 | 0.775648 |
Target: 5'- uCGCGcGCCGUCgucgGGGUCgAa-CGCGUa -3' miRNA: 3'- -GCGC-CGGUAGaa--CCUAGgUggGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 73682 | 0.66 | 0.775648 |
Target: 5'- cCGC-GCCAUCgaugaaGGcgCgGCCCgGCGCg -3' miRNA: 3'- -GCGcCGGUAGaa----CCuaGgUGGG-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 31174 | 0.66 | 0.775648 |
Target: 5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3' miRNA: 3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 29319 | 0.66 | 0.775648 |
Target: 5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3' miRNA: 3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 33568 | 0.66 | 0.784772 |
Target: 5'- aCGCGGggggCGUC-UGGcgCgGCCCGgGCu -3' miRNA: 3'- -GCGCCg---GUAGaACCuaGgUGGGCgCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 66045 | 0.66 | 0.784772 |
Target: 5'- aCGCGGCCcgCcc--GUCCGCgCGCGg -3' miRNA: 3'- -GCGCCGGuaGaaccUAGGUGgGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 51761 | 0.66 | 0.793763 |
Target: 5'- aCGCGGUCugggugGGAUgCGgcgccagcucgcCCCGCGCg -3' miRNA: 3'- -GCGCCGGuagaa-CCUAgGU------------GGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 38229 | 0.66 | 0.793763 |
Target: 5'- cCGCGcGCC-UCUacgcGGccgCCAguCCCGCGCg -3' miRNA: 3'- -GCGC-CGGuAGAa---CCua-GGU--GGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 72643 | 0.66 | 0.793763 |
Target: 5'- gGCGGCUg---UGGccgCCACCC-CGCg -3' miRNA: 3'- gCGCCGGuagaACCua-GGUGGGcGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 57020 | 0.66 | 0.793763 |
Target: 5'- gCGCGcGCCcgCUuuUGG---CGCCCGCGUc -3' miRNA: 3'- -GCGC-CGGuaGA--ACCuagGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 98591 | 0.66 | 0.791976 |
Target: 5'- gCGCGGCgccagcgcgucaAUCUccGaAUCCGCCuCGCGCa -3' miRNA: 3'- -GCGCCGg-----------UAGAacC-UAGGUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 108704 | 0.66 | 0.79108 |
Target: 5'- gCGCGGCCuaccgcugccccGUCUcgcggcugggcgacUGcGAcgcgacggcguUCCugCCGCGCu -3' miRNA: 3'- -GCGCCGG------------UAGA--------------AC-CU-----------AGGugGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 129763 | 0.66 | 0.788385 |
Target: 5'- cCGcCGGCCG-CUcggaccgccggagccUGGGcccggCCGCgCCGCGCg -3' miRNA: 3'- -GC-GCCGGUaGA---------------ACCUa----GGUG-GGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 118413 | 0.66 | 0.784772 |
Target: 5'- uCGUGGCCGUCgccUGcGGUCUcgGCgCCGUGg -3' miRNA: 3'- -GCGCCGGUAGa--AC-CUAGG--UG-GGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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