Results 81 - 100 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 5' | -58.6 | NC_001847.1 | + | 122670 | 0.66 | 0.766399 |
Target: 5'- cCGCcGCCA-CgcgGGAagccgcggaggcUCCGCCgCGCGCg -3' miRNA: 3'- -GCGcCGGUaGaa-CCU------------AGGUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 112976 | 0.66 | 0.766399 |
Target: 5'- uCGCGGCgCgAUCgu--GUCCACCaCGUGCu -3' miRNA: 3'- -GCGCCG-G-UAGaaccUAGGUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 110949 | 0.66 | 0.766399 |
Target: 5'- -cUGGCCGUCaUGG--CCACCaGCGCc -3' miRNA: 3'- gcGCCGGUAGaACCuaGGUGGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 14734 | 0.66 | 0.766399 |
Target: 5'- aCGCGGUCGUCUgcagcauaacGAagcagUCGCCCGCGg -3' miRNA: 3'- -GCGCCGGUAGAac--------CUa----GGUGGGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 95297 | 0.66 | 0.766399 |
Target: 5'- uGCGGCCG-C-UGGcgCCuCCagGCGCg -3' miRNA: 3'- gCGCCGGUaGaACCuaGGuGGg-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 45595 | 0.66 | 0.766399 |
Target: 5'- aCGCGGCCcgCg-GGccaAUCUgACCCGuCGCu -3' miRNA: 3'- -GCGCCGGuaGaaCC---UAGG-UGGGC-GCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 53719 | 0.66 | 0.766399 |
Target: 5'- gGCGGCUcgCggggcGGAUCgGCgCGCGg -3' miRNA: 3'- gCGCCGGuaGaa---CCUAGgUGgGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 29319 | 0.66 | 0.775648 |
Target: 5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3' miRNA: 3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 31174 | 0.66 | 0.775648 |
Target: 5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3' miRNA: 3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 73682 | 0.66 | 0.775648 |
Target: 5'- cCGC-GCCAUCgaugaaGGcgCgGCCCgGCGCg -3' miRNA: 3'- -GCGcCGGUAGaa----CCuaGgUGGG-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 129763 | 0.66 | 0.788385 |
Target: 5'- cCGcCGGCCG-CUcggaccgccggagccUGGGcccggCCGCgCCGCGCg -3' miRNA: 3'- -GC-GCCGGUaGA---------------ACCUa----GGUG-GGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 118413 | 0.66 | 0.784772 |
Target: 5'- uCGUGGCCGUCgccUGcGGUCUcgGCgCCGUGg -3' miRNA: 3'- -GCGCCGGUAGa--AC-CUAGG--UG-GGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 66045 | 0.66 | 0.784772 |
Target: 5'- aCGCGGCCcgCcc--GUCCGCgCGCGg -3' miRNA: 3'- -GCGCCGGuaGaaccUAGGUGgGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 33568 | 0.66 | 0.784772 |
Target: 5'- aCGCGGggggCGUC-UGGcgCgGCCCGgGCu -3' miRNA: 3'- -GCGCCg---GUAGaACCuaGgUGGGCgCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 2941 | 0.66 | 0.784772 |
Target: 5'- gCGCGGCCGcCUccagcgcGGcggCCGCCUcgGCGCg -3' miRNA: 3'- -GCGCCGGUaGAa------CCua-GGUGGG--CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 74153 | 0.66 | 0.784772 |
Target: 5'- gGCGGCC-UCgacGGcgCCguggGCgCGCGCa -3' miRNA: 3'- gCGCCGGuAGaa-CCuaGG----UGgGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 61640 | 0.66 | 0.784772 |
Target: 5'- aGCGGUC--CUUGGccgacaccUCCGCCgGCGUg -3' miRNA: 3'- gCGCCGGuaGAACCu-------AGGUGGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 71554 | 0.66 | 0.783866 |
Target: 5'- aCGCGGCCAcgggguggcggUCgaacacgaGGGUcacagugCCGCCCgGCGCc -3' miRNA: 3'- -GCGCCGGU-----------AGaa------CCUA-------GGUGGG-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 51699 | 0.66 | 0.775648 |
Target: 5'- uCGCGcGCCGUCgucgGGGUCgAa-CGCGUa -3' miRNA: 3'- -GCGC-CGGUAGaa--CCUAGgUggGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 104563 | 0.67 | 0.760794 |
Target: 5'- aCGCGGCgGUCcuccUGGAccucgucccagacgCCGCggagCCGCGCg -3' miRNA: 3'- -GCGCCGgUAGa---ACCUa-------------GGUG----GGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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