miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 6300 0.67 0.757035
Target:  5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3'
miRNA:   3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 68937 0.67 0.753258
Target:  5'- gGCGGCCGcgggCUgcgccuccagccaGGcGUCCagcgcgGCCCGCGCg -3'
miRNA:   3'- gCGCCGGUa---GAa------------CC-UAGG------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39880 0.67 0.747563
Target:  5'- aCGCGGCCc----GGGUCCAggCCGgGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGUg-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 102220 0.67 0.747563
Target:  5'- gCGCgGGUCGUCgggcgGGAcggcgUCCaggcGCUCGCGCg -3'
miRNA:   3'- -GCG-CCGGUAGaa---CCU-----AGG----UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 57872 0.67 0.747563
Target:  5'- uCGCcGCCGUCgcacgagGGuGUCgcccgccagCGCCCGCGCg -3'
miRNA:   3'- -GCGcCGGUAGaa-----CC-UAG---------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14734 0.66 0.766399
Target:  5'- aCGCGGUCGUCUgcagcauaacGAagcagUCGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUAGAac--------CUa----GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 110949 0.66 0.766399
Target:  5'- -cUGGCCGUCaUGG--CCACCaGCGCc -3'
miRNA:   3'- gcGCCGGUAGaACCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2941 0.66 0.784772
Target:  5'- gCGCGGCCGcCUccagcgcGGcggCCGCCUcgGCGCg -3'
miRNA:   3'- -GCGCCGGUaGAa------CCua-GGUGGG--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 74153 0.66 0.784772
Target:  5'- gGCGGCC-UCgacGGcgCCguggGCgCGCGCa -3'
miRNA:   3'- gCGCCGGuAGaa-CCuaGG----UGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61640 0.66 0.784772
Target:  5'- aGCGGUC--CUUGGccgacaccUCCGCCgGCGUg -3'
miRNA:   3'- gCGCCGGuaGAACCu-------AGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 71554 0.66 0.783866
Target:  5'- aCGCGGCCAcgggguggcggUCgaacacgaGGGUcacagugCCGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGU-----------AGaa------CCUA-------GGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 51699 0.66 0.775648
Target:  5'- uCGCGcGCCGUCgucgGGGUCgAa-CGCGUa -3'
miRNA:   3'- -GCGC-CGGUAGaa--CCUAGgUggGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 73682 0.66 0.775648
Target:  5'- cCGC-GCCAUCgaugaaGGcgCgGCCCgGCGCg -3'
miRNA:   3'- -GCGcCGGUAGaa----CCuaGgUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 31174 0.66 0.775648
Target:  5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3'
miRNA:   3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5'
6365 5' -58.6 NC_001847.1 + 29319 0.66 0.775648
Target:  5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91873 0.66 0.774728
Target:  5'- gCGCGG-CGUCgcagcaggUGccccccgggcgccGcgCCGCCCGCGCg -3'
miRNA:   3'- -GCGCCgGUAGa-------AC-------------CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 66643 0.66 0.772886
Target:  5'- gGgGGCgCGUUUgUGGAcugccuggcgcgcuUgCGCCCGCGCg -3'
miRNA:   3'- gCgCCG-GUAGA-ACCU--------------AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101823 0.66 0.767329
Target:  5'- cCGCgaGGCCGUCUUcGGugugcgccguugcgCCugCCGCGa -3'
miRNA:   3'- -GCG--CCGGUAGAA-CCua------------GGugGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 122670 0.66 0.766399
Target:  5'- cCGCcGCCA-CgcgGGAagccgcggaggcUCCGCCgCGCGCg -3'
miRNA:   3'- -GCGcCGGUaGaa-CCU------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 112976 0.66 0.766399
Target:  5'- uCGCGGCgCgAUCgu--GUCCACCaCGUGCu -3'
miRNA:   3'- -GCGCCG-G-UAGaaccUAGGUGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.