miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 51590 0.67 0.737031
Target:  5'- gGCaGCCGUCg-GGAgggcagugcUCCACCCcggggcgGCGCa -3'
miRNA:   3'- gCGcCGGUAGaaCCU---------AGGUGGG-------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 84040 0.67 0.736068
Target:  5'- aGCGccucGCgCAUCUUGaagucgcGGUCCucgaccaGCCCGCGCa -3'
miRNA:   3'- gCGC----CG-GUAGAAC-------CUAGG-------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 77046 0.67 0.757035
Target:  5'- aCGuCGGCCAUCggaagcugcUGGuacUCCGgCgGCGCu -3'
miRNA:   3'- -GC-GCCGGUAGa--------ACCu--AGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 125073 0.67 0.757035
Target:  5'- gCGCGGCgg----GGcgCUggGCCCGCGCg -3'
miRNA:   3'- -GCGCCGguagaaCCuaGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39380 0.67 0.757035
Target:  5'- cCGCGacGCCGUCggGGAgccggcgCCGgCCGgGCu -3'
miRNA:   3'- -GCGC--CGGUAGaaCCUa------GGUgGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 31174 0.66 0.775648
Target:  5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3'
miRNA:   3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5'
6365 5' -58.6 NC_001847.1 + 29319 0.66 0.775648
Target:  5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91873 0.66 0.774728
Target:  5'- gCGCGG-CGUCgcagcaggUGccccccgggcgccGcgCCGCCCGCGCg -3'
miRNA:   3'- -GCGCCgGUAGa-------AC-------------CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 66643 0.66 0.772886
Target:  5'- gGgGGCgCGUUUgUGGAcugccuggcgcgcuUgCGCCCGCGCg -3'
miRNA:   3'- gCgCCG-GUAGA-ACCU--------------AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101823 0.66 0.767329
Target:  5'- cCGCgaGGCCGUCUUcGGugugcgccguugcgCCugCCGCGa -3'
miRNA:   3'- -GCG--CCGGUAGAA-CCua------------GGugGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 122670 0.66 0.766399
Target:  5'- cCGCcGCCA-CgcgGGAagccgcggaggcUCCGCCgCGCGCg -3'
miRNA:   3'- -GCGcCGGUaGaa-CCU------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 112976 0.66 0.766399
Target:  5'- uCGCGGCgCgAUCgu--GUCCACCaCGUGCu -3'
miRNA:   3'- -GCGCCG-G-UAGaaccUAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 78653 0.67 0.734139
Target:  5'- cCGCGGCUcucGUCUcgcagcauuucGUCCGCCuCGCGCc -3'
miRNA:   3'- -GCGCCGG---UAGAacc--------UAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 110949 0.66 0.766399
Target:  5'- -cUGGCCGUCaUGG--CCACCaGCGCc -3'
miRNA:   3'- gcGCCGGUAGaACCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14734 0.66 0.766399
Target:  5'- aCGCGGUCGUCUgcagcauaacGAagcagUCGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUAGAac--------CUa----GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 95297 0.66 0.766399
Target:  5'- uGCGGCCG-C-UGGcgCCuCCagGCGCg -3'
miRNA:   3'- gCGCCGGUaGaACCuaGGuGGg-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 45595 0.66 0.766399
Target:  5'- aCGCGGCCcgCg-GGccaAUCUgACCCGuCGCu -3'
miRNA:   3'- -GCGCCGGuaGaaCC---UAGG-UGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 53719 0.66 0.766399
Target:  5'- gGCGGCUcgCggggcGGAUCgGCgCGCGg -3'
miRNA:   3'- gCGCCGGuaGaa---CCUAGgUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 104563 0.67 0.760794
Target:  5'- aCGCGGCgGUCcuccUGGAccucgucccagacgCCGCggagCCGCGCg -3'
miRNA:   3'- -GCGCCGgUAGa---ACCUa-------------GGUG----GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 40914 0.67 0.760794
Target:  5'- -aCGGCCcgCgcGGGcgccccgccgcgagcUCCGCCgCGCGCa -3'
miRNA:   3'- gcGCCGGuaGaaCCU---------------AGGUGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.