Results 1 - 20 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 5' | -58.6 | NC_001847.1 | + | 116900 | 1.12 | 0.00102 |
Target: 5'- uCGCGGCCAUCUUGGAUCCACCCGCGCg -3' miRNA: 3'- -GCGCCGGUAGAACCUAGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 92390 | 0.79 | 0.171626 |
Target: 5'- --aGGCCGUCcUGGAUcugcuguccgccccgCCGCCCGCGCg -3' miRNA: 3'- gcgCCGGUAGaACCUA---------------GGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 28351 | 0.79 | 0.187641 |
Target: 5'- gCGCGGCCGUC----AUCCGCCCGCuGCu -3' miRNA: 3'- -GCGCCGGUAGaaccUAGGUGGGCG-CG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 14064 | 0.78 | 0.197095 |
Target: 5'- uCGCGGCCGgugCUUGGG-CCGCUCGUGg -3' miRNA: 3'- -GCGCCGGUa--GAACCUaGGUGGGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 59376 | 0.77 | 0.217255 |
Target: 5'- cCGCGGCCGU-----GUUCACCCGCGCg -3' miRNA: 3'- -GCGCCGGUAgaaccUAGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 122012 | 0.77 | 0.233511 |
Target: 5'- cCGCGGCaggCggcgcGGcgCCGCCCGCGCg -3' miRNA: 3'- -GCGCCGguaGaa---CCuaGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 51419 | 0.77 | 0.233511 |
Target: 5'- gGCGGCgCAgac-GGAgCCGCCCGCGCg -3' miRNA: 3'- gCGCCG-GUagaaCCUaGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 67444 | 0.77 | 0.233511 |
Target: 5'- gGCGGUCAUCUcGaGGUCCAgCgCGCGCg -3' miRNA: 3'- gCGCCGGUAGAaC-CUAGGUgG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 104749 | 0.76 | 0.250778 |
Target: 5'- gGCGGCCA-CUcGGG-CCGCCgGCGCu -3' miRNA: 3'- gCGCCGGUaGAaCCUaGGUGGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 1936 | 0.76 | 0.250778 |
Target: 5'- gGCGGCCA-CUcGGG-CCGCCgGCGCu -3' miRNA: 3'- gCGCCGGUaGAaCCUaGGUGGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 83296 | 0.76 | 0.250778 |
Target: 5'- uGCGGCC-UCcu-GAUCgACCCGCGCa -3' miRNA: 3'- gCGCCGGuAGaacCUAGgUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 62120 | 0.76 | 0.256764 |
Target: 5'- cCGCGGCCG-CUgccgcggccUGGuUCCgcGCCCGCGCu -3' miRNA: 3'- -GCGCCGGUaGA---------ACCuAGG--UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 85057 | 0.76 | 0.269085 |
Target: 5'- gCGCGGCagcCUUGGccgcgcccggGUCCGCgCCGCGCg -3' miRNA: 3'- -GCGCCGguaGAACC----------UAGGUG-GGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 47733 | 0.76 | 0.275422 |
Target: 5'- gCGCGGCgGgCggGGccCCGCCCGCGCg -3' miRNA: 3'- -GCGCCGgUaGaaCCuaGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 121884 | 0.75 | 0.288454 |
Target: 5'- aCGCGGCCugccUGcGAaCCGCCCGCGUg -3' miRNA: 3'- -GCGCCGGuagaAC-CUaGGUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 37599 | 0.75 | 0.301965 |
Target: 5'- gGCGGCCGg---GGGcCgGCCCGCGCu -3' miRNA: 3'- gCGCCGGUagaaCCUaGgUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 74633 | 0.75 | 0.301965 |
Target: 5'- cCGCGGCCAUaaaaaGGcccgCCgGCCCGCGCg -3' miRNA: 3'- -GCGCCGGUAgaa--CCua--GG-UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 57085 | 0.75 | 0.301965 |
Target: 5'- gGCGGCCAgcgCUgcgcUGGAccgccgcgCCGCCgCGCGCa -3' miRNA: 3'- gCGCCGGUa--GA----ACCUa-------GGUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 62546 | 0.75 | 0.301965 |
Target: 5'- uGCGGCCAgcagcgcgUUUUGGc-CCAgCCCGCGCa -3' miRNA: 3'- gCGCCGGU--------AGAACCuaGGU-GGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 67589 | 0.75 | 0.308901 |
Target: 5'- cCGC-GCCgAUCUgGGAgaaCCGCCCGCGCc -3' miRNA: 3'- -GCGcCGG-UAGAaCCUa--GGUGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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