miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 83 0.7 0.555674
Target:  5'- cCG-GGCCcgCUcugggcuccgccccUGGGUCCGgcgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuaGA--------------ACCUAGGU----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 144 0.74 0.348446
Target:  5'- gCGCGGCCAUCUUGcuUCCAaacucauuagcauacCCCGCcCa -3'
miRNA:   3'- -GCGCCGGUAGAACcuAGGU---------------GGGCGcG- -5'
6365 5' -58.6 NC_001847.1 + 477 0.7 0.538962
Target:  5'- gGC-GCCGUCaUGGGU--GCCCGCGCc -3'
miRNA:   3'- gCGcCGGUAGaACCUAggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 604 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 641 0.67 0.718594
Target:  5'- cCGCGGCCG-CacGGcccacacuaCACCCGUGCa -3'
miRNA:   3'- -GCGCCGGUaGaaCCuag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 904 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 1193 0.67 0.708782
Target:  5'- cCGCGGCCGgcagCUcgucgGGcgCCAgcUCCaGCGCg -3'
miRNA:   3'- -GCGCCGGUa---GAa----CCuaGGU--GGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 1683 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 1736 0.68 0.698907
Target:  5'- cCGCGGCCAgccgCgcgcagaGGuacUCCACCgCGcCGCg -3'
miRNA:   3'- -GCGCCGGUa---Gaa-----CCu--AGGUGG-GC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 1936 0.76 0.250778
Target:  5'- gGCGGCCA-CUcGGG-CCGCCgGCGCu -3'
miRNA:   3'- gCGCCGGUaGAaCCUaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2335 0.66 0.782048
Target:  5'- gCGCGgaacccGCCGUUUUGcacgggccgcaugaGGUCCAgUCGCGCg -3'
miRNA:   3'- -GCGC------CGGUAGAAC--------------CUAGGUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2559 0.69 0.628732
Target:  5'- gGCgGGCUGUCUUcGGcgCgggCGCCUGCGCg -3'
miRNA:   3'- gCG-CCGGUAGAA-CCuaG---GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2679 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 2789 0.67 0.747563
Target:  5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3'
miRNA:   3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2818 0.66 0.779313
Target:  5'- uCGCuGGCCGugcugaggguugcgaUCUcgGGGUCCGCCaUGcCGCu -3'
miRNA:   3'- -GCG-CCGGU---------------AGAa-CCUAGGUGG-GC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 2941 0.66 0.784772
Target:  5'- gCGCGGCCGcCUccagcgcGGcggCCGCCUcgGCGCg -3'
miRNA:   3'- -GCGCCGGUaGAa------CCua-GGUGGG--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 2986 0.71 0.509912
Target:  5'- cCGgGGCCGgcgC-UGGAgCCGCgCGCGCu -3'
miRNA:   3'- -GCgCCGGUa--GaACCUaGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3099 0.67 0.718594
Target:  5'- cCGCGGCCGgca-GGccgCgGCCCGcCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GgUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 3220 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3474 0.66 0.802613
Target:  5'- gCGCGGCCA---UGGcGUCCccgACCgGCGg -3'
miRNA:   3'- -GCGCCGGUagaACC-UAGG---UGGgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.