miRNA display CGI


Results 41 - 60 of 678 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 72645 0.66 0.693651
Target:  5'- -cGGcUGUgGCCGCCaccccGCGGcCGcCCGCc -3'
miRNA:   3'- gaCCaGCAgCGGCGG-----UGCCuGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 97562 0.66 0.693651
Target:  5'- -cGGcCGccgcaGCCGCaGCGGccaGCGCCGCc -3'
miRNA:   3'- gaCCaGCag---CGGCGgUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 102754 0.66 0.693651
Target:  5'- -cGGggCGUCG-UGCCGCGuGCGCgCGCc -3'
miRNA:   3'- gaCCa-GCAGCgGCGGUGCcUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 108073 0.66 0.693651
Target:  5'- gUGGgcgCGgUGCCGCC-CgGGGgGCUGCg -3'
miRNA:   3'- gACCa--GCaGCGGCGGuG-CCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 123276 0.66 0.693651
Target:  5'- gUGGcuuuuauacgcUCG-CGCCGcCCGCaGGGCGgCGCc -3'
miRNA:   3'- gACC-----------AGCaGCGGC-GGUG-CCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 49502 0.66 0.683972
Target:  5'- cCUGaUCGgCGCCGCUucgcCGGGCGCgGg -3'
miRNA:   3'- -GACcAGCaGCGGCGGu---GCCUGCGgCg -5'
6366 3' -61.6 NC_001847.1 + 132675 0.66 0.683972
Target:  5'- -cGG-CGggggCGCCGCCGCccgcucgaucgGGAgcuCGCUGCg -3'
miRNA:   3'- gaCCaGCa---GCGGCGGUG-----------CCU---GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129032 0.66 0.674254
Target:  5'- -aGGcgcUCG-CGCCGCgccuCGCGGGCGUcuCGCg -3'
miRNA:   3'- gaCC---AGCaGCGGCG----GUGCCUGCG--GCG- -5'
6366 3' -61.6 NC_001847.1 + 2971 0.66 0.674254
Target:  5'- -cGGcgCGcagCGCCGCCGgGGcCGgCGCu -3'
miRNA:   3'- gaCCa-GCa--GCGGCGGUgCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 92021 0.66 0.674254
Target:  5'- -cGGgccCG-CGCCGUCuGCGGGCaCCGCc -3'
miRNA:   3'- gaCCa--GCaGCGGCGG-UGCCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28021 0.66 0.678145
Target:  5'- -cGGcCGUCauaGCCGCCgccaucgaagccgagGCGGGgGCgGCg -3'
miRNA:   3'- gaCCaGCAG---CGGCGG---------------UGCCUgCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 119369 0.66 0.683002
Target:  5'- -cGG-CGcUUGCCGCCggcgaaaGCGGGcCGcCCGCg -3'
miRNA:   3'- gaCCaGC-AGCGGCGG-------UGCCU-GC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 92521 0.66 0.683002
Target:  5'- -cGG-CGcUGCCGCCccccuccGCGGcgGCGCCGUc -3'
miRNA:   3'- gaCCaGCaGCGGCGG-------UGCC--UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28503 0.66 0.683972
Target:  5'- uCUGG-CGaggCGUgGCC-CGGcagcGCGCCGCc -3'
miRNA:   3'- -GACCaGCa--GCGgCGGuGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 95953 0.66 0.683972
Target:  5'- gCUGGcgggcgagCGUgagcgcagcagcCGCUGCCGCGGcuGCGCgGCc -3'
miRNA:   3'- -GACCa-------GCA------------GCGGCGGUGCC--UGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 104976 0.66 0.683972
Target:  5'- -aGGUCcgccgagCGCCacgcacccaggGCgCACGGcGCGCCGCg -3'
miRNA:   3'- gaCCAGca-----GCGG-----------CG-GUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 108805 0.66 0.683972
Target:  5'- gCUGcaUGUaCGCCGCCuucgcgcgccuGgGGACGCUGCc -3'
miRNA:   3'- -GACcaGCA-GCGGCGG-----------UgCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 125417 0.66 0.683972
Target:  5'- aCUGcccCGgCGCCGCCGgaGGAC-CCGCg -3'
miRNA:   3'- -GACca-GCaGCGGCGGUg-CCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11337 0.66 0.683972
Target:  5'- -aGGaCGgCGCCuGCCGCuGcCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGG-CGGUGcCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 66348 0.66 0.683972
Target:  5'- ----cCGUCGgcCCGCUcgcGCGGcCGCCGCg -3'
miRNA:   3'- gaccaGCAGC--GGCGG---UGCCuGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.