miRNA display CGI


Results 21 - 40 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 81287 0.76 0.188874
Target:  5'- -cGGUCGgCGCCGCCA---GCGCCGCc -3'
miRNA:   3'- gaCCAGCaGCGGCGGUgccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33516 0.76 0.180015
Target:  5'- -cGG-CGggCGCCGCCGCGGagGCGCCGg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCC--UGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 1468 0.76 0.198115
Target:  5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3'
miRNA:   3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 104281 0.76 0.198115
Target:  5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3'
miRNA:   3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29442 0.76 0.184397
Target:  5'- gCUGGggCGUggCGCCGcCCGCGGccgaaGCGCCGCc -3'
miRNA:   3'- -GACCa-GCA--GCGGC-GGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31871 0.76 0.190691
Target:  5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3'
miRNA:   3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 105331 0.75 0.239094
Target:  5'- cCUGcGUCGUCGUgggCGCCG-GGGCGCuCGCg -3'
miRNA:   3'- -GAC-CAGCAGCG---GCGGUgCCUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 93627 0.75 0.212713
Target:  5'- -cGGcCGgCGCgGCCGCGGACGuCUGCa -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 86639 0.75 0.207747
Target:  5'- gUGGgCGggccgCGCCGCCcCGGagcGCGCCGCg -3'
miRNA:   3'- gACCaGCa----GCGGCGGuGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 38091 0.75 0.217781
Target:  5'- -cGGUCGgggaaaGCaGCC-CGGACGCCGCu -3'
miRNA:   3'- gaCCAGCag----CGgCGGuGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 89866 0.75 0.212713
Target:  5'- -aGGcCGgcUCGCCGCgGCGGGCuucGCCGCg -3'
miRNA:   3'- gaCCaGC--AGCGGCGgUGCCUG---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29148 0.75 0.233607
Target:  5'- gCUGcGcCGUCGCCuGCCGCGaGGCGCUGg -3'
miRNA:   3'- -GAC-CaGCAGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 1094 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 38033 0.75 0.212713
Target:  5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3'
miRNA:   3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 97923 0.75 0.207747
Target:  5'- -gGGUCGUCcgcGCCGCCGCcaagcggcaccGGGCGCCucGCa -3'
miRNA:   3'- gaCCAGCAG---CGGCGGUG-----------CCUGCGG--CG- -5'
6366 3' -61.6 NC_001847.1 + 103907 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 80444 0.75 0.217781
Target:  5'- -cGcGUCGUCcuCC-CCGCGGGCGCCGCc -3'
miRNA:   3'- gaC-CAGCAGc-GGcGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 72989 0.75 0.217781
Target:  5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3'
miRNA:   3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 50148 0.75 0.217781
Target:  5'- -cGGUCGUCGCCGgCgugACGGucuucugccuCGCCGCc -3'
miRNA:   3'- gaCCAGCAGCGGCgG---UGCCu---------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 85080 0.75 0.212713
Target:  5'- -gGGUcCG-CGCCGCgCGCGGAC-CCGCg -3'
miRNA:   3'- gaCCA-GCaGCGGCG-GUGCCUGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.