miRNA display CGI


Results 41 - 60 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 89866 0.75 0.212713
Target:  5'- -aGGcCGgcUCGCCGCgGCGGGCuucGCCGCg -3'
miRNA:   3'- gaCCaGC--AGCGGCGgUGCCUG---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29148 0.75 0.233607
Target:  5'- gCUGcGcCGUCGCCuGCCGCGaGGCGCUGg -3'
miRNA:   3'- -GAC-CaGCAGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 72989 0.75 0.217781
Target:  5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3'
miRNA:   3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 45507 0.75 0.222952
Target:  5'- -cGGggCGggCGCCGCCGcCGGGCGgCGCg -3'
miRNA:   3'- gaCCa-GCa-GCGGCGGU-GCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 103907 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1094 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 105331 0.75 0.239094
Target:  5'- cCUGcGUCGUCGUgggCGCCG-GGGCGCuCGCg -3'
miRNA:   3'- -GAC-CAGCAGCG---GCGGUgCCUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 38033 0.75 0.212713
Target:  5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3'
miRNA:   3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 104576 0.74 0.274297
Target:  5'- cCUGGaccUCGUCccagaCGCCGCGGA-GCCGCg -3'
miRNA:   3'- -GACC---AGCAGcg---GCGGUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 104873 0.74 0.268153
Target:  5'- uUGuGUCGUCuG-CGCCGCGGcGCGCUGCa -3'
miRNA:   3'- gAC-CAGCAG-CgGCGGUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 74302 0.74 0.268153
Target:  5'- cCUGG-CGcCGCgcagCGCCGCGGGCGCCccucGCg -3'
miRNA:   3'- -GACCaGCaGCG----GCGGUGCCUGCGG----CG- -5'
6366 3' -61.6 NC_001847.1 + 78255 0.74 0.262121
Target:  5'- -cGG-CGUCGCCGUCgccgGCGGGCccguugGCCGCg -3'
miRNA:   3'- gaCCaGCAGCGGCGG----UGCCUG------CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 43546 0.74 0.244687
Target:  5'- -aGGagaagCGCCGCCGCGaGCGCCGCg -3'
miRNA:   3'- gaCCagca-GCGGCGGUGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75382 0.74 0.273059
Target:  5'- gUGGgacaccgucucgCGUCGCCGCCGCGaGGCGggcaUCGCg -3'
miRNA:   3'- gACCa-----------GCAGCGGCGGUGC-CUGC----GGCG- -5'
6366 3' -61.6 NC_001847.1 + 32371 0.74 0.268153
Target:  5'- -gGGgggCGcCGgCGUCGCGGGCGUCGCg -3'
miRNA:   3'- gaCCa--GCaGCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31782 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 74436 0.74 0.274297
Target:  5'- -aGGUCGUgGCgGCgCAC-GACGCCGUg -3'
miRNA:   3'- gaCCAGCAgCGgCG-GUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15875 0.74 0.244687
Target:  5'- aCUGGcccUCGacgaGCCG-CGCGGGCGCCGCc -3'
miRNA:   3'- -GACC---AGCag--CGGCgGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129468 0.74 0.274297
Target:  5'- gCUGG-CGgcCGCCGCCGCGcgcGACGgCGCg -3'
miRNA:   3'- -GACCaGCa-GCGGCGGUGC---CUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 31722 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.