miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 11837 0.74 0.250389
Target:  5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3'
miRNA:   3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 104873 0.74 0.268153
Target:  5'- uUGuGUCGUCuG-CGCCGCGGcGCGCUGCa -3'
miRNA:   3'- gAC-CAGCAG-CgGCGGUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134595 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 35542 0.74 0.244687
Target:  5'- -aGGUCGUgGCUGCCgagGCGGcgcGCGaCCGCg -3'
miRNA:   3'- gaCCAGCAgCGGCGG---UGCC---UGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 53865 0.74 0.250389
Target:  5'- gCUGGcggCGcCGaCCGCCGCGGGgGCgGCg -3'
miRNA:   3'- -GACCa--GCaGC-GGCGGUGCCUgCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 89165 0.74 0.268153
Target:  5'- aCUGcGUCGUCGCCGaCGCGcGCGCCu- -3'
miRNA:   3'- -GAC-CAGCAGCGGCgGUGCcUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 32138 0.74 0.262121
Target:  5'- gCUGGgCGcCGCCGCgccCGCGcACGCCGCg -3'
miRNA:   3'- -GACCaGCaGCGGCG---GUGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75822 0.74 0.244687
Target:  5'- gCUGGUaCGgCGCCGCC---GGCGCCGCg -3'
miRNA:   3'- -GACCA-GCaGCGGCGGugcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 32371 0.74 0.268153
Target:  5'- -gGGgggCGcCGgCGUCGCGGGCGUCGCg -3'
miRNA:   3'- gaCCa--GCaGCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 43546 0.74 0.244687
Target:  5'- -aGGagaagCGCCGCCGCGaGCGCCGCg -3'
miRNA:   3'- gaCCagca-GCGGCGGUGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33436 0.74 0.274297
Target:  5'- -cGGgCGcUCGgCGUCGCGGGCGUCGCu -3'
miRNA:   3'- gaCCaGC-AGCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 78255 0.74 0.262121
Target:  5'- -cGG-CGUCGCCGUCgccgGCGGGCccguugGCCGCg -3'
miRNA:   3'- gaCCaGCAGCGGCGG----UGCCUG------CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31722 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 81027 0.74 0.268153
Target:  5'- aUGGgCGaCGCCGCCGCGGACuGCgGg -3'
miRNA:   3'- gACCaGCaGCGGCGGUGCCUG-CGgCg -5'
6366 3' -61.6 NC_001847.1 + 15875 0.74 0.244687
Target:  5'- aCUGGcccUCGacgaGCCG-CGCGGGCGCCGCc -3'
miRNA:   3'- -GACC---AGCag--CGGCgGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 79524 0.73 0.299998
Target:  5'- gCUGGcggCGUCGUCGCCGuCGGG-GCCGg -3'
miRNA:   3'- -GACCa--GCAGCGGCGGU-GCCUgCGGCg -5'
6366 3' -61.6 NC_001847.1 + 125565 0.73 0.306708
Target:  5'- -cGGcUCGaUCGCgGCCGCGGGCGgCGg -3'
miRNA:   3'- gaCC-AGC-AGCGgCGGUGCCUGCgGCg -5'
6366 3' -61.6 NC_001847.1 + 41983 0.73 0.299998
Target:  5'- -cGGggCGUCGCgGCCGCcuuucccgcgggGGGCGCCGg -3'
miRNA:   3'- gaCCa-GCAGCGgCGGUG------------CCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 30851 0.73 0.306708
Target:  5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3'
miRNA:   3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119200 0.73 0.306708
Target:  5'- aUGGcgagcUCGUCGgCGCCGCGGcCaCCGCg -3'
miRNA:   3'- gACC-----AGCAGCgGCGGUGCCuGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.