miRNA display CGI


Results 81 - 100 of 678 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 91876 0.73 0.286921
Target:  5'- -cGG-CGUCGCagcaggUGCCcccCGGGCGCCGCg -3'
miRNA:   3'- gaCCaGCAGCG------GCGGu--GCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 60465 0.73 0.280553
Target:  5'- --cGUCGggcgCGuCCGCCAUGG-CGCCGCc -3'
miRNA:   3'- gacCAGCa---GC-GGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132367 0.73 0.286921
Target:  5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3'
miRNA:   3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 8388 0.73 0.286921
Target:  5'- gUGGgCGUCuGCCGCguaggcUACGGGCaGCCGCa -3'
miRNA:   3'- gACCaGCAG-CGGCG------GUGCCUG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119200 0.73 0.306708
Target:  5'- aUGGcgagcUCGUCGgCGCCGCGGcCaCCGCg -3'
miRNA:   3'- gACC-----AGCAGCgGCGGUGCCuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 59113 0.73 0.280553
Target:  5'- --cGUCGUCGCCGCCGCcgcuccgGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGCGGUGccug---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 77613 0.73 0.293403
Target:  5'- uCUGG-CGgCGCCGCUgggcgaggACGGcGCGCCGCc -3'
miRNA:   3'- -GACCaGCaGCGGCGG--------UGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 130675 0.73 0.299998
Target:  5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3'
miRNA:   3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33667 0.73 0.299998
Target:  5'- -cGGUCGcuagcgCGCCGCCcuuGCGGccGCGCgGCg -3'
miRNA:   3'- gaCCAGCa-----GCGGCGG---UGCC--UGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 15562 0.73 0.293403
Target:  5'- -cGGcCGUCGg-GCCGCGGcCGCCGCu -3'
miRNA:   3'- gaCCaGCAGCggCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 106416 0.73 0.313531
Target:  5'- -cGG-CGaCGCUGcCCGCGGccGCGCCGCg -3'
miRNA:   3'- gaCCaGCaGCGGC-GGUGCC--UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 27862 0.73 0.299998
Target:  5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3'
miRNA:   3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29554 0.73 0.286921
Target:  5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3'
miRNA:   3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 47857 0.73 0.306708
Target:  5'- -aGGUCGcgUGCUG-CGCGGGCGCgCGCa -3'
miRNA:   3'- gaCCAGCa-GCGGCgGUGCCUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 30851 0.73 0.306708
Target:  5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3'
miRNA:   3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 41983 0.73 0.299998
Target:  5'- -cGGggCGUCGCgGCCGCcuuucccgcgggGGGCGCCGg -3'
miRNA:   3'- gaCCa-GCAGCGgCGGUG------------CCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 125565 0.73 0.306708
Target:  5'- -cGGcUCGaUCGCgGCCGCGGGCGgCGg -3'
miRNA:   3'- gaCC-AGC-AGCGgCGGUGCCUGCgGCg -5'
6366 3' -61.6 NC_001847.1 + 79524 0.73 0.299998
Target:  5'- gCUGGcggCGUCGUCGCCGuCGGG-GCCGg -3'
miRNA:   3'- -GACCa--GCAGCGGCGGU-GCCUgCGGCg -5'
6366 3' -61.6 NC_001847.1 + 78315 0.73 0.306708
Target:  5'- -cGGcgCGgcgCGCgCGCCGCGGgcccggcuuggGCGCCGCg -3'
miRNA:   3'- gaCCa-GCa--GCG-GCGGUGCC-----------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 76908 0.73 0.293403
Target:  5'- -cGGUCGcgCGCCGCCGC---UGCCGCc -3'
miRNA:   3'- gaCCAGCa-GCGGCGGUGccuGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.