miRNA display CGI


Results 101 - 120 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 27862 0.73 0.299998
Target:  5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3'
miRNA:   3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75713 0.73 0.29275
Target:  5'- uUGGUCGUCaGCCagGCC-CGGGgcgcagcgaugacCGCCGCg -3'
miRNA:   3'- gACCAGCAG-CGG--CGGuGCCU-------------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 76908 0.73 0.293403
Target:  5'- -cGGUCGcgCGCCGCCGC---UGCCGCc -3'
miRNA:   3'- gaCCAGCa-GCGGCGGUGccuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 77613 0.73 0.293403
Target:  5'- uCUGG-CGgCGCCGCUgggcgaggACGGcGCGCCGCc -3'
miRNA:   3'- -GACCaGCaGCGGCGG--------UGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15562 0.73 0.293403
Target:  5'- -cGGcCGUCGg-GCCGCGGcCGCCGCu -3'
miRNA:   3'- gaCCaGCAGCggCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 48669 0.73 0.313531
Target:  5'- cCUcGUCGUCcguGCCGCCGuCGG-CGCCGUc -3'
miRNA:   3'- -GAcCAGCAG---CGGCGGU-GCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 22051 0.72 0.32047
Target:  5'- gCUGGa-GUCGCUGCCGCucACGUCGCa -3'
miRNA:   3'- -GACCagCAGCGGCGGUGccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 111344 0.72 0.32047
Target:  5'- gUGGUCgGUgGCCGCCGCgcuGGGCGaccuCGCg -3'
miRNA:   3'- gACCAG-CAgCGGCGGUG---CCUGCg---GCG- -5'
6366 3' -61.6 NC_001847.1 + 115718 0.72 0.341969
Target:  5'- -cGuGUgCGcUUGCCGCCACGGGCG-CGCu -3'
miRNA:   3'- gaC-CA-GC-AGCGGCGGUGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 49394 0.72 0.334689
Target:  5'- -cGG-CGUUGCCGUCaugGCGGGCuCCGCg -3'
miRNA:   3'- gaCCaGCAGCGGCGG---UGCCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75233 0.72 0.341969
Target:  5'- -cGGcUC-UCGCCGCgCGCGcGCGCCGCc -3'
miRNA:   3'- gaCC-AGcAGCGGCG-GUGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 38933 0.72 0.356872
Target:  5'- -aGcGUCGUCGUCccggGCC-CGGGgGCCGCg -3'
miRNA:   3'- gaC-CAGCAGCGG----CGGuGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 63579 0.72 0.334689
Target:  5'- -aGGUgCGcUCGCUGCCGUGGAUGaCCGCc -3'
miRNA:   3'- gaCCA-GC-AGCGGCGGUGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 104812 0.72 0.327522
Target:  5'- gCUcGUCGUccagccCGCCGCCggggggGCGGGCGuCCGCa -3'
miRNA:   3'- -GAcCAGCA------GCGGCGG------UGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 65682 0.72 0.334689
Target:  5'- -aGGagcccCGcCGCCGCCGCGcGcGCGCCGCc -3'
miRNA:   3'- gaCCa----GCaGCGGCGGUGC-C-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 71393 0.72 0.327522
Target:  5'- cCUGGccCG-CGCCGCCAgGcGGCGCUGUu -3'
miRNA:   3'- -GACCa-GCaGCGGCGGUgC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 70676 0.72 0.32047
Target:  5'- cCUGcuUCGgccccccgCGCCGCCGCGGGCgGCgGCg -3'
miRNA:   3'- -GACc-AGCa-------GCGGCGGUGCCUG-CGgCG- -5'
6366 3' -61.6 NC_001847.1 + 31214 0.72 0.327522
Target:  5'- gCUGGUgcugGagGCCGCgGCGG-CGCCGCc -3'
miRNA:   3'- -GACCAg---CagCGGCGgUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 103968 0.72 0.327522
Target:  5'- aUGG-CGUCGgCGCCcagcGCGGcgucgACGCCGCc -3'
miRNA:   3'- gACCaGCAGCgGCGG----UGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132955 0.72 0.327522
Target:  5'- -aGGUgCGcccgcaCGCCGCCcaggcggcGCGGGCGCUGCg -3'
miRNA:   3'- gaCCA-GCa-----GCGGCGG--------UGCCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.