miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 15922 0.74 0.262121
Target:  5'- cCUGcccCGcCGCC-CCGCGGugGCCGCg -3'
miRNA:   3'- -GACca-GCaGCGGcGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 74302 0.74 0.268153
Target:  5'- cCUGG-CGcCGCgcagCGCCGCGGGCGCCccucGCg -3'
miRNA:   3'- -GACCaGCaGCG----GCGGUGCCUGCGG----CG- -5'
6366 3' -61.6 NC_001847.1 + 104873 0.74 0.268153
Target:  5'- uUGuGUCGUCuG-CGCCGCGGcGCGCUGCa -3'
miRNA:   3'- gAC-CAGCAG-CgGCGGUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 81027 0.74 0.268153
Target:  5'- aUGGgCGaCGCCGCCGCGGACuGCgGg -3'
miRNA:   3'- gACCaGCaGCGGCGGUGCCUG-CGgCg -5'
6366 3' -61.6 NC_001847.1 + 31722 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134535 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 89165 0.74 0.268153
Target:  5'- aCUGcGUCGUCGCCGaCGCGcGCGCCu- -3'
miRNA:   3'- -GAC-CAGCAGCGGCgGUGCcUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 32371 0.74 0.268153
Target:  5'- -gGGgggCGcCGgCGUCGCGGGCGUCGCg -3'
miRNA:   3'- gaCCa--GCaGCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75382 0.74 0.273059
Target:  5'- gUGGgacaccgucucgCGUCGCCGCCGCGaGGCGggcaUCGCg -3'
miRNA:   3'- gACCa-----------GCAGCGGCGGUGC-CUGC----GGCG- -5'
6366 3' -61.6 NC_001847.1 + 104576 0.74 0.274297
Target:  5'- cCUGGaccUCGUCccagaCGCCGCGGA-GCCGCg -3'
miRNA:   3'- -GACC---AGCAGcg---GCGGUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33436 0.74 0.274297
Target:  5'- -cGGgCGcUCGgCGUCGCGGGCGUCGCu -3'
miRNA:   3'- gaCCaGC-AGCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31782 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129468 0.74 0.274297
Target:  5'- gCUGG-CGgcCGCCGCCGCGcgcGACGgCGCg -3'
miRNA:   3'- -GACCaGCa-GCGGCGGUGC---CUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 74436 0.74 0.274297
Target:  5'- -aGGUCGUgGCgGCgCAC-GACGCCGUg -3'
miRNA:   3'- gaCCAGCAgCGgCG-GUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134595 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 78832 0.73 0.280553
Target:  5'- -cGGccuUCG-CGgcCCGCCGCGcGACGCCGCa -3'
miRNA:   3'- gaCC---AGCaGC--GGCGGUGC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 59113 0.73 0.280553
Target:  5'- --cGUCGUCGCCGCCGCcgcuccgGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGCGGUGccug---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 60465 0.73 0.280553
Target:  5'- --cGUCGggcgCGuCCGCCAUGG-CGCCGCc -3'
miRNA:   3'- gacCAGCa---GC-GGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 90235 0.73 0.280553
Target:  5'- -cGGUCGcggcCGCCGCCGCGGccugugacGCGCuCGUu -3'
miRNA:   3'- gaCCAGCa---GCGGCGGUGCC--------UGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 92795 0.73 0.280553
Target:  5'- -aGaGUaCGUCGCCGCCgcgcacACGGGCGCCcacaGCa -3'
miRNA:   3'- gaC-CA-GCAGCGGCGG------UGCCUGCGG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.