Results 81 - 100 of 678 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 3' | -61.6 | NC_001847.1 | + | 8388 | 0.73 | 0.286921 |
Target: 5'- gUGGgCGUCuGCCGCguaggcUACGGGCaGCCGCa -3' miRNA: 3'- gACCaGCAG-CGGCG------GUGCCUG-CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 91876 | 0.73 | 0.286921 |
Target: 5'- -cGG-CGUCGCagcaggUGCCcccCGGGCGCCGCg -3' miRNA: 3'- gaCCaGCAGCG------GCGGu--GCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 29554 | 0.73 | 0.286921 |
Target: 5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3' miRNA: 3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 132367 | 0.73 | 0.286921 |
Target: 5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3' miRNA: 3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 75713 | 0.73 | 0.29275 |
Target: 5'- uUGGUCGUCaGCCagGCC-CGGGgcgcagcgaugacCGCCGCg -3' miRNA: 3'- gACCAGCAG-CGG--CGGuGCCU-------------GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 124826 | 0.73 | 0.293403 |
Target: 5'- -gGGUCcaugGUUGCCGCCGCaGcacCGCCGCa -3' miRNA: 3'- gaCCAG----CAGCGGCGGUGcCu--GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 15562 | 0.73 | 0.293403 |
Target: 5'- -cGGcCGUCGg-GCCGCGGcCGCCGCu -3' miRNA: 3'- gaCCaGCAGCggCGGUGCCuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 77613 | 0.73 | 0.293403 |
Target: 5'- uCUGG-CGgCGCCGCUgggcgaggACGGcGCGCCGCc -3' miRNA: 3'- -GACCaGCaGCGGCGG--------UGCC-UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 76908 | 0.73 | 0.293403 |
Target: 5'- -cGGUCGcgCGCCGCCGC---UGCCGCc -3' miRNA: 3'- gaCCAGCa-GCGGCGGUGccuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 79524 | 0.73 | 0.299998 |
Target: 5'- gCUGGcggCGUCGUCGCCGuCGGG-GCCGg -3' miRNA: 3'- -GACCa--GCAGCGGCGGU-GCCUgCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 41983 | 0.73 | 0.299998 |
Target: 5'- -cGGggCGUCGCgGCCGCcuuucccgcgggGGGCGCCGg -3' miRNA: 3'- gaCCa-GCAGCGgCGGUG------------CCUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 27862 | 0.73 | 0.299998 |
Target: 5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3' miRNA: 3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 130675 | 0.73 | 0.299998 |
Target: 5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3' miRNA: 3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 33667 | 0.73 | 0.299998 |
Target: 5'- -cGGUCGcuagcgCGCCGCCcuuGCGGccGCGCgGCg -3' miRNA: 3'- gaCCAGCa-----GCGGCGG---UGCC--UGCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 78315 | 0.73 | 0.306708 |
Target: 5'- -cGGcgCGgcgCGCgCGCCGCGGgcccggcuuggGCGCCGCg -3' miRNA: 3'- gaCCa-GCa--GCG-GCGGUGCC-----------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 30851 | 0.73 | 0.306708 |
Target: 5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3' miRNA: 3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 119200 | 0.73 | 0.306708 |
Target: 5'- aUGGcgagcUCGUCGgCGCCGCGGcCaCCGCg -3' miRNA: 3'- gACC-----AGCAGCgGCGGUGCCuGcGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 133664 | 0.73 | 0.306708 |
Target: 5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3' miRNA: 3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 47857 | 0.73 | 0.306708 |
Target: 5'- -aGGUCGcgUGCUG-CGCGGGCGCgCGCa -3' miRNA: 3'- gaCCAGCa-GCGGCgGUGCCUGCG-GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 125565 | 0.73 | 0.306708 |
Target: 5'- -cGGcUCGaUCGCgGCCGCGGGCGgCGg -3' miRNA: 3'- gaCC-AGC-AGCGgCGGUGCCUGCgGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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