miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 103019 0.66 0.674254
Target:  5'- -cGG-CGcccagCGCCgGCgGCGGGCggGCCGCa -3'
miRNA:   3'- gaCCaGCa----GCGG-CGgUGCCUG--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129032 0.66 0.674254
Target:  5'- -aGGcgcUCG-CGCCGCgccuCGCGGGCGUcuCGCg -3'
miRNA:   3'- gaCC---AGCaGCGGCG----GUGCCUGCG--GCG- -5'
6366 3' -61.6 NC_001847.1 + 2971 0.66 0.674254
Target:  5'- -cGGcgCGcagCGCCGCCGgGGcCGgCGCu -3'
miRNA:   3'- gaCCa-GCa--GCGGCGGUgCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 92021 0.66 0.674254
Target:  5'- -cGGgccCG-CGCCGUCuGCGGGCaCCGCc -3'
miRNA:   3'- gaCCa--GCaGCGGCGG-UGCCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 90577 0.66 0.674254
Target:  5'- -aGGUCGaacgggaGCa-CCACGGGCGUCGUu -3'
miRNA:   3'- gaCCAGCag-----CGgcGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 73055 0.66 0.674254
Target:  5'- gCUGG-CGaaGCaacgCGCCGCGGGCGCgGa -3'
miRNA:   3'- -GACCaGCagCG----GCGGUGCCUGCGgCg -5'
6366 3' -61.6 NC_001847.1 + 46203 0.66 0.674254
Target:  5'- -aGGUCGgcgugucCGUCGCgCAUGGcgcagaGCCGCg -3'
miRNA:   3'- gaCCAGCa------GCGGCG-GUGCCug----CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31561 0.66 0.674254
Target:  5'- -aGGcCGgCGCCGCCGgCGGcGgGCCGg -3'
miRNA:   3'- gaCCaGCaGCGGCGGU-GCC-UgCGGCg -5'
6366 3' -61.6 NC_001847.1 + 86769 0.66 0.674254
Target:  5'- -cGGccCGgCGgCGCCACGGucgugACGCUGCu -3'
miRNA:   3'- gaCCa-GCaGCgGCGGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5909 0.66 0.674254
Target:  5'- uUGGUCuGgcaGCCGCUagGCGGAUggGCgGCg -3'
miRNA:   3'- gACCAG-Cag-CGGCGG--UGCCUG--CGgCG- -5'
6366 3' -61.6 NC_001847.1 + 88431 0.66 0.67328
Target:  5'- -gGGUC-UCGCUuuauucggcguggGCCGCGGGCcccgaCCGCg -3'
miRNA:   3'- gaCCAGcAGCGG-------------CGGUGCCUGc----GGCG- -5'
6366 3' -61.6 NC_001847.1 + 59590 0.66 0.671332
Target:  5'- gCUGGcgugcgCGUcCGcCCGCgACGGgaagcgcaaugcagACGCCGCc -3'
miRNA:   3'- -GACCa-----GCA-GC-GGCGgUGCC--------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 100998 0.66 0.670357
Target:  5'- -aGGU-GcCGCCGCgGCGGcaguuacugccgcCGCCGCg -3'
miRNA:   3'- gaCCAgCaGCGGCGgUGCCu------------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 75306 0.66 0.664504
Target:  5'- cCUGGcCGgUGCC-CCGCGaGGCGCUGg -3'
miRNA:   3'- -GACCaGCaGCGGcGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 104514 0.66 0.664504
Target:  5'- ---uUCGgcgGCCGCCGCGuuugcGGCGCUGCg -3'
miRNA:   3'- gaccAGCag-CGGCGGUGC-----CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 2636 0.66 0.664504
Target:  5'- -cGGgaccgcCGUCGCCGCuUGCGG-CGCCu- -3'
miRNA:   3'- gaCCa-----GCAGCGGCG-GUGCCuGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 82504 0.66 0.664504
Target:  5'- -aGGUCG-CGuCUGgCGCGG-CGCuCGCg -3'
miRNA:   3'- gaCCAGCaGC-GGCgGUGCCuGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 15449 0.66 0.664504
Target:  5'- -gGGUcugacucucgcCGUCGCCuucggguCCugGGGgGCCGCc -3'
miRNA:   3'- gaCCA-----------GCAGCGGc------GGugCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 55453 0.66 0.664504
Target:  5'- cCUGGcgccggCGgggCGCgCGCCGCGcuaGCCGCu -3'
miRNA:   3'- -GACCa-----GCa--GCG-GCGGUGCcugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119510 0.66 0.664504
Target:  5'- aCUGGUUcaUG-CGCCACGGGggcgucguucCGCCGUa -3'
miRNA:   3'- -GACCAGcaGCgGCGGUGCCU----------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.