miRNA display CGI


Results 41 - 60 of 678 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 8986 0.7 0.452767
Target:  5'- -cGGUUGUgGCCGCCGCGcuguuugccaucguGcGCGgCCGCg -3'
miRNA:   3'- gaCCAGCAgCGGCGGUGC--------------C-UGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 9909 0.68 0.528625
Target:  5'- gUGGUCucgggcccCGCCcCCGCGGAcgagcacgcuCGCCGCg -3'
miRNA:   3'- gACCAGca------GCGGcGGUGCCU----------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 10037 0.66 0.65473
Target:  5'- -gGGcUUcUCGCCGCCGCGaacGACaucuugGCCGCg -3'
miRNA:   3'- gaCC-AGcAGCGGCGGUGC---CUG------CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 10379 0.75 0.239094
Target:  5'- -gGGUCGcCGCuCGCgGCGGG-GCCGCu -3'
miRNA:   3'- gaCCAGCaGCG-GCGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 10693 0.68 0.525794
Target:  5'- -cGGUCG-CGCCcgGgCGCGGcccgcgccggccaaGCGCCGCc -3'
miRNA:   3'- gaCCAGCaGCGG--CgGUGCC--------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11232 0.68 0.570723
Target:  5'- uCUGGUgGaggagcCGCCguuuucgggaagcuuGCCGCGGGCGCUGg -3'
miRNA:   3'- -GACCAgCa-----GCGG---------------CGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 11337 0.66 0.683972
Target:  5'- -aGGaCGgCGCCuGCCGCuGcCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGG-CGGUGcCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11392 0.69 0.467843
Target:  5'- -gGGcCGcugcuaucaugcagCGCCGCCGCcGAUGCCGCc -3'
miRNA:   3'- gaCCaGCa-------------GCGGCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11496 0.7 0.420901
Target:  5'- uCUGGcUCaggCGCCuucaGCCAaGGGCGCCGCc -3'
miRNA:   3'- -GACC-AGca-GCGG----CGGUgCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11837 0.74 0.250389
Target:  5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3'
miRNA:   3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 11935 0.7 0.455409
Target:  5'- -aGG-CGcCcuuagaCGCCAUGGACGCCGCu -3'
miRNA:   3'- gaCCaGCaGcg----GCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 12047 0.71 0.372224
Target:  5'- gCUGGaCGcccUGCgCGCUGCGGACGCCGa -3'
miRNA:   3'- -GACCaGCa--GCG-GCGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 12549 0.68 0.547636
Target:  5'- uUGG-CGggaCGCaggugCGCaACGGGCGCCGCg -3'
miRNA:   3'- gACCaGCa--GCG-----GCGgUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 12914 0.69 0.464273
Target:  5'- -cGcGcCGU-GCCGCCGCGGGgGCgCGCg -3'
miRNA:   3'- gaC-CaGCAgCGGCGGUGCCUgCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 13088 0.69 0.508933
Target:  5'- -cGGUCGUacaggaaguacaCGCCGCCGuccuccuCGGcuGCGgCCGCg -3'
miRNA:   3'- gaCCAGCA------------GCGGCGGU-------GCC--UGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 13109 0.68 0.557223
Target:  5'- ---uUUGUCGCgGCCGgGGcgcgcgggcgGCGCCGCg -3'
miRNA:   3'- gaccAGCAGCGgCGGUgCC----------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 13310 0.7 0.420058
Target:  5'- -cGGUCGUCGaggcagacgggcuCCGgCACGGGCGgcgagcaggcgcCCGCg -3'
miRNA:   3'- gaCCAGCAGC-------------GGCgGUGCCUGC------------GGCG- -5'
6366 3' -61.6 NC_001847.1 + 13918 0.67 0.595989
Target:  5'- gCUGGggcgcUCGgugccgCGCCGCgGCagGGGgGCCGCc -3'
miRNA:   3'- -GACC-----AGCa-----GCGGCGgUG--CCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14039 0.67 0.635141
Target:  5'- gCUGGUCGgccgcgaGCCGCUagguucGCGGccggugcuuGgGCCGCu -3'
miRNA:   3'- -GACCAGCag-----CGGCGG------UGCC---------UgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14346 0.69 0.482265
Target:  5'- gUGGUgG-CGgCGCCuGCGGggaACGCCGCc -3'
miRNA:   3'- gACCAgCaGCgGCGG-UGCC---UGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.