miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 14428 0.66 0.65473
Target:  5'- -gGGUCG-CGaCUGCCucgACGG-CGCCGg -3'
miRNA:   3'- gaCCAGCaGC-GGCGG---UGCCuGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 14532 0.7 0.446637
Target:  5'- -cGG-CGcUCGCUGcCCGCGG-UGCCGCc -3'
miRNA:   3'- gaCCaGC-AGCGGC-GGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14575 0.66 0.65473
Target:  5'- gCUGG-CGggcgCGCgGCUcucuaaGGACGCCGUc -3'
miRNA:   3'- -GACCaGCa---GCGgCGGug----CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14627 0.68 0.538102
Target:  5'- gUGGUUuUCGaCCGCgGCGcucgcGCGCCGCu -3'
miRNA:   3'- gACCAGcAGC-GGCGgUGCc----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14913 0.66 0.651795
Target:  5'- -aGGcCGacugccUCGCCGCgaUacacaaggcugcgaGCGGGCGCCGCu -3'
miRNA:   3'- gaCCaGC------AGCGGCG--G--------------UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 14921 0.66 0.65473
Target:  5'- uUGG-CGUaCGCCGCgACGGcCuaCCGCu -3'
miRNA:   3'- gACCaGCA-GCGGCGgUGCCuGc-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 15017 0.67 0.586246
Target:  5'- -cGGUgGggccgCGCgaGCCGCGGcCGCCGg -3'
miRNA:   3'- gaCCAgCa----GCGg-CGGUGCCuGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 15021 0.67 0.59014
Target:  5'- -aGGUCGcggcaauggcuugagUCGCCGaCgCGCGGGCGCUu- -3'
miRNA:   3'- gaCCAGC---------------AGCGGC-G-GUGCCUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 15311 0.68 0.576533
Target:  5'- -cGG-CGUCGgggGCCGCGGGCGuaGCg -3'
miRNA:   3'- gaCCaGCAGCgg-CGGUGCCUGCggCG- -5'
6366 3' -61.6 NC_001847.1 + 15449 0.66 0.664504
Target:  5'- -gGGUcugacucucgcCGUCGCCuucggguCCugGGGgGCCGCc -3'
miRNA:   3'- gaCCA-----------GCAGCGGc------GGugCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15542 0.68 0.557223
Target:  5'- -gGGccUCGUCGUCGCCG-GGugG-CGCg -3'
miRNA:   3'- gaCC--AGCAGCGGCGGUgCCugCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 15562 0.73 0.293403
Target:  5'- -cGGcCGUCGg-GCCGCGGcCGCCGCu -3'
miRNA:   3'- gaCCaGCAGCggCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15597 0.68 0.547636
Target:  5'- uCUGGcCGcgcgccccUUGCCcagccugccgGCCGCGGcCGCCGCc -3'
miRNA:   3'- -GACCaGC--------AGCGG----------CGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15875 0.74 0.244687
Target:  5'- aCUGGcccUCGacgaGCCG-CGCGGGCGCCGCc -3'
miRNA:   3'- -GACC---AGCag--CGGCgGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 15922 0.74 0.262121
Target:  5'- cCUGcccCGcCGCC-CCGCGGugGCCGCg -3'
miRNA:   3'- -GACca-GCaGCGGcGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 16162 0.69 0.491387
Target:  5'- --uGUCGcaCGCCGCCGCGcuCGUCGCg -3'
miRNA:   3'- gacCAGCa-GCGGCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 17379 0.68 0.538102
Target:  5'- gUGGaUGUCGgCGCCcaccaugaGCGuGACGCUGCc -3'
miRNA:   3'- gACCaGCAGCgGCGG--------UGC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 17622 0.69 0.491387
Target:  5'- -cGGccUCGUCGUCGCCGCGcGugGa-GCg -3'
miRNA:   3'- gaCC--AGCAGCGGCGGUGC-CugCggCG- -5'
6366 3' -61.6 NC_001847.1 + 17839 0.67 0.615542
Target:  5'- -aGGUCGcccaUCGCgGCuCGCGuugccaGCGCCGCc -3'
miRNA:   3'- gaCCAGC----AGCGgCG-GUGCc-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 18390 0.66 0.65473
Target:  5'- -cGG-CGUCcUCGCCcuGCGGGC-CCGCg -3'
miRNA:   3'- gaCCaGCAGcGGCGG--UGCCUGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.