miRNA display CGI


Results 81 - 100 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 18531 0.68 0.547636
Target:  5'- -cGGgCG-CGCCGCCGuccGCGCCGCa -3'
miRNA:   3'- gaCCaGCaGCGGCGGUgccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 18699 0.66 0.693651
Target:  5'- -cGGcccgCGUCaCCGCCA---GCGCCGCg -3'
miRNA:   3'- gaCCa---GCAGcGGCGGUgccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 18746 0.67 0.635141
Target:  5'- -gGGgcccagagCGcCGCCGCCGCGGcuaAgGCgGCg -3'
miRNA:   3'- gaCCa-------GCaGCGGCGGUGCC---UgCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 19354 0.67 0.595989
Target:  5'- -gGGUCuugCGCgCGCCcgACGGugGCCa- -3'
miRNA:   3'- gaCCAGca-GCG-GCGG--UGCCugCGGcg -5'
6366 3' -61.6 NC_001847.1 + 19638 0.66 0.664504
Target:  5'- -gGcGUCGgcgCGCgGCCgcuuGCGGGCccgGCCGCc -3'
miRNA:   3'- gaC-CAGCa--GCGgCGG----UGCCUG---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 19918 0.71 0.372224
Target:  5'- -aGGgCGUCGCCGCCGacc-UGCCGCa -3'
miRNA:   3'- gaCCaGCAGCGGCGGUgccuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 20716 0.7 0.455409
Target:  5'- uUGGguugcCGUUGCCGCCGuCGGACaGaCCGg -3'
miRNA:   3'- gACCa----GCAGCGGCGGU-GCCUG-C-GGCg -5'
6366 3' -61.6 NC_001847.1 + 21202 0.68 0.557223
Target:  5'- -cGG-CGUaggagaCGCCGCCGCGaccgcGCGCUGCu -3'
miRNA:   3'- gaCCaGCA------GCGGCGGUGCc----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 21239 0.69 0.464273
Target:  5'- ---cUC-UCGCUGCUGCGGAUGCUGCu -3'
miRNA:   3'- gaccAGcAGCGGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 21427 0.7 0.420901
Target:  5'- gCUGGgcgCGUaCGaguaccccgucCCGCaCGCGGACGCgGCa -3'
miRNA:   3'- -GACCa--GCA-GC-----------GGCG-GUGCCUGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 21508 0.67 0.615542
Target:  5'- -cGGgCG-CGCCuCgGCGGGgGCCGCg -3'
miRNA:   3'- gaCCaGCaGCGGcGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 22051 0.72 0.32047
Target:  5'- gCUGGa-GUCGCUGCCGCucACGUCGCa -3'
miRNA:   3'- -GACCagCAGCGGCGGUGccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 22171 0.67 0.595989
Target:  5'- gUGGacacgaUCG-CGCCGCgaaugCGCGGGCGCUGg -3'
miRNA:   3'- gACC------AGCaGCGGCG-----GUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 22606 0.68 0.547636
Target:  5'- -cGGUCG-CGUgGCaaGCGaGugGCCGCg -3'
miRNA:   3'- gaCCAGCaGCGgCGg-UGC-CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 22875 0.68 0.538102
Target:  5'- uCUGGgggGUCGCCGCCGgGGuu-CUGCa -3'
miRNA:   3'- -GACCag-CAGCGGCGGUgCCugcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 23526 0.68 0.547636
Target:  5'- --cGagGUCGCCGCC-CGugaaGACGCCGUu -3'
miRNA:   3'- gacCagCAGCGGCGGuGC----CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 23743 0.67 0.624359
Target:  5'- uUGGUCGUacucgaagGCCGUCuugaacuuggccaGCGGAUGCCcggGCg -3'
miRNA:   3'- gACCAGCAg-------CGGCGG-------------UGCCUGCGG---CG- -5'
6366 3' -61.6 NC_001847.1 + 23860 0.7 0.455409
Target:  5'- -cGGcCGagCGCCGCCccCGGcccgGCGCCGCc -3'
miRNA:   3'- gaCCaGCa-GCGGCGGu-GCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 24874 0.66 0.674254
Target:  5'- -aGGUUGUCGCagcgcgucgacuCGUCcCGGGCgagcagGCCGCg -3'
miRNA:   3'- gaCCAGCAGCG------------GCGGuGCCUG------CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 26774 0.68 0.547636
Target:  5'- cCUGGUCaGUgCGCgCGCCcuccUGcGCGCCGCa -3'
miRNA:   3'- -GACCAG-CA-GCG-GCGGu---GCcUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.