miRNA display CGI


Results 101 - 120 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 27095 0.69 0.464273
Target:  5'- gCUGGaggCGUCGCCgagGUCGCGccaagccucuucGACGUCGCg -3'
miRNA:   3'- -GACCa--GCAGCGG---CGGUGC------------CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 27327 0.69 0.491387
Target:  5'- -cGcGcCGcCGCCGCCgcgcuuugccGCGGcCGCCGCa -3'
miRNA:   3'- gaC-CaGCaGCGGCGG----------UGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 27505 0.67 0.586246
Target:  5'- -aGGccUCGgcCGCCGCCGCGG-CgGCgGCg -3'
miRNA:   3'- gaCC--AGCa-GCGGCGGUGCCuG-CGgCG- -5'
6366 3' -61.6 NC_001847.1 + 27862 0.73 0.299998
Target:  5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3'
miRNA:   3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 27976 0.67 0.615542
Target:  5'- -cGGUgGagGCgGCCGCGGccggggcggagGCGgCCGCg -3'
miRNA:   3'- gaCCAgCagCGgCGGUGCC-----------UGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 27981 0.66 0.65473
Target:  5'- ---uUCGUggCGCCGCgCugGGccGCGCUGCa -3'
miRNA:   3'- gaccAGCA--GCGGCG-GugCC--UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28021 0.66 0.678145
Target:  5'- -cGGcCGUCauaGCCGCCgccaucgaagccgagGCGGGgGCgGCg -3'
miRNA:   3'- gaCCaGCAG---CGGCGG---------------UGCCUgCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 28082 0.67 0.625339
Target:  5'- uCUGGUgcUGUggCGCCuGCC-CGGG-GCCGCg -3'
miRNA:   3'- -GACCA--GCA--GCGG-CGGuGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28331 0.67 0.605757
Target:  5'- -cGGgccCGgCGCC-CCGCGGG-GCCGCg -3'
miRNA:   3'- gaCCa--GCaGCGGcGGUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28369 0.66 0.693651
Target:  5'- -cGG-CGcccUCGCCGCCggagACGGcgcccccccCGCCGCg -3'
miRNA:   3'- gaCCaGC---AGCGGCGG----UGCCu--------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28440 0.69 0.491387
Target:  5'- gCUGGcuacgccgCGgCGCCGCgCgACGGGcCGCCGCc -3'
miRNA:   3'- -GACCa-------GCaGCGGCG-G-UGCCU-GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28464 0.8 0.101953
Target:  5'- aUGGcCGcCGUggcacgacgCGCCGCGGACGCCGCg -3'
miRNA:   3'- gACCaGCaGCG---------GCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28503 0.66 0.683972
Target:  5'- uCUGG-CGaggCGUgGCC-CGGcagcGCGCCGCc -3'
miRNA:   3'- -GACCaGCa--GCGgCGGuGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28609 0.66 0.693651
Target:  5'- -aGG-CGgcCGCgCGCUACGcGGCGgCCGCg -3'
miRNA:   3'- gaCCaGCa-GCG-GCGGUGC-CUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 28703 0.67 0.595989
Target:  5'- cCUGGU-GUaCGCgCGCCGCG-ACGCCa- -3'
miRNA:   3'- -GACCAgCA-GCG-GCGGUGCcUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 28738 0.68 0.538102
Target:  5'- -cGGgcagCGUCGCCGCgCGCGuGCGUgccgaCGCg -3'
miRNA:   3'- gaCCa---GCAGCGGCG-GUGCcUGCG-----GCG- -5'
6366 3' -61.6 NC_001847.1 + 28858 0.69 0.497819
Target:  5'- -cGGUCGgggaCGCCaugGCCGCgcagaacgcgcuguGGGCGCUGCc -3'
miRNA:   3'- gaCCAGCa---GCGG---CGGUG--------------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28880 0.72 0.337587
Target:  5'- gCUGGggcgaGUugcagagcacgcggcCGCCGUUugGGACGCCGUg -3'
miRNA:   3'- -GACCag---CA---------------GCGGCGGugCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29050 0.66 0.65473
Target:  5'- gCUGcG-CGccgugcUCGCCgGCCGCGcGGCGCCGg -3'
miRNA:   3'- -GAC-CaGC------AGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 29069 0.67 0.625339
Target:  5'- gUGGgcugCGUgGCgGUgGCGGGCGgCGUg -3'
miRNA:   3'- gACCa---GCAgCGgCGgUGCCUGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.