miRNA display CGI


Results 21 - 40 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 132858 0.69 0.509864
Target:  5'- -cGG-CGgcccCGCCGCCgACGGcggcuucCGCCGCg -3'
miRNA:   3'- gaCCaGCa---GCGGCGG-UGCCu------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132835 0.7 0.43796
Target:  5'- -cGGgCGU-GUCGCCAUGGGCaGCCGUc -3'
miRNA:   3'- gaCCaGCAgCGGCGGUGCCUG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132772 0.67 0.615542
Target:  5'- -cGG-CGaaaagcCGCCGCCGCcGACGCgGCc -3'
miRNA:   3'- gaCCaGCa-----GCGGCGGUGcCUGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 132675 0.66 0.683972
Target:  5'- -cGG-CGggggCGCCGCCGCccgcucgaucgGGAgcuCGCUGCg -3'
miRNA:   3'- gaCCaGCa---GCGGCGGUG-----------CCU---GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132554 0.68 0.566857
Target:  5'- -gGGcUCGcgUGCgGCCGCGG-CGgCCGCg -3'
miRNA:   3'- gaCC-AGCa-GCGgCGGUGCCuGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 132485 0.68 0.547636
Target:  5'- -cGGcCGa-GCCGCCggGCGaaGGCGCCGCa -3'
miRNA:   3'- gaCCaGCagCGGCGG--UGC--CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132367 0.73 0.286921
Target:  5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3'
miRNA:   3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 132183 0.67 0.615542
Target:  5'- -cGGcgcugCG-CGCCGagGCGGcCGCCGCg -3'
miRNA:   3'- gaCCa----GCaGCGGCggUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131991 0.68 0.557223
Target:  5'- -aGG-CGgccCGCCgcGCCGCcGGCGCCGCc -3'
miRNA:   3'- gaCCaGCa--GCGG--CGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131961 0.75 0.233607
Target:  5'- gCUGcGcCGUCGCCuGCCGCGaGGCGCUGg -3'
miRNA:   3'- -GAC-CaGCAGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 131899 0.7 0.420901
Target:  5'- aCUGGUC-UCGCUgcuguaccgcaaGCCGCGG-CGgCGCg -3'
miRNA:   3'- -GACCAGcAGCGG------------CGGUGCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 131863 0.66 0.65473
Target:  5'- gCUGcG-CGccgugcUCGCCgGCCGCGcGGCGCCGg -3'
miRNA:   3'- -GAC-CaGC------AGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 131671 0.69 0.497819
Target:  5'- -cGGUCGgggaCGCCaugGCCGCgcagaacgcgcuguGGGCGCUGCc -3'
miRNA:   3'- gaCCAGCa---GCGG---CGGUG--------------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131545 0.68 0.547636
Target:  5'- uUGGUCuUUGCCGCaACG-ACGCCGa -3'
miRNA:   3'- gACCAGcAGCGGCGgUGCcUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 131516 0.67 0.595989
Target:  5'- cCUGGU-GUaCGCgCGCCGCG-ACGCCa- -3'
miRNA:   3'- -GACCAgCA-GCG-GCGGUGCcUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 131422 0.66 0.693651
Target:  5'- -aGG-CGgcCGCgCGCUACGcGGCGgCCGCg -3'
miRNA:   3'- gaCCaGCa-GCG-GCGGUGC-CUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 131316 0.66 0.683972
Target:  5'- uCUGG-CGaggCGUgGCC-CGGcagcGCGCCGCc -3'
miRNA:   3'- -GACCaGCa--GCGgCGGuGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131294 0.66 0.64494
Target:  5'- -cGGcgcCGUCuaCGUCugGGGCGgCGCg -3'
miRNA:   3'- gaCCa--GCAGcgGCGGugCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 131253 0.69 0.491387
Target:  5'- gCUGGcuacgccgCGgCGCCGCgCgACGGGcCGCCGCc -3'
miRNA:   3'- -GACCa-------GCaGCGGCG-G-UGCCU-GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131206 0.7 0.458943
Target:  5'- -gGGUCGcgcUCGCCGCCcgcugccagcgcuguGCGuGCGuCCGCg -3'
miRNA:   3'- gaCCAGC---AGCGGCGG---------------UGCcUGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.