miRNA display CGI


Results 41 - 60 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 131182 0.66 0.693651
Target:  5'- -cGG-CGcccUCGCCGCCggagACGGcgcccccccCGCCGCg -3'
miRNA:   3'- gaCCaGC---AGCGGCGG----UGCCu--------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 131144 0.67 0.605757
Target:  5'- -cGGgccCGgCGCC-CCGCGGG-GCCGCg -3'
miRNA:   3'- gaCCa--GCaGCGGcGGUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 130834 0.66 0.678145
Target:  5'- -cGGcCGUCauaGCCGCCgccaucgaagccgagGCGGGgGCgGCg -3'
miRNA:   3'- gaCCaGCAG---CGGCGG---------------UGCCUgCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 130789 0.67 0.615542
Target:  5'- -cGGUgGagGCgGCCGCGGccggggcggagGCGgCCGCg -3'
miRNA:   3'- gaCCAgCagCGgCGGUGCC-----------UGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 130675 0.73 0.299998
Target:  5'- -aGGgacgCGgggggCGCCGaggaCGCGGACGUCGCg -3'
miRNA:   3'- gaCCa---GCa----GCGGCg---GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 130551 0.69 0.464273
Target:  5'- gUGGccgccuUCGUCGCCGCgCAcCGcGAC-CCGCa -3'
miRNA:   3'- gACC------AGCAGCGGCG-GU-GC-CUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 130140 0.69 0.491387
Target:  5'- -cGcGcCGcCGCCGCCgcgcuuugccGCGGcCGCCGCa -3'
miRNA:   3'- gaC-CaGCaGCGGCGG----------UGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 130067 0.68 0.538102
Target:  5'- -cGGcgacgCGUCGCCGuCCugGGccGCGCC-Cg -3'
miRNA:   3'- gaCCa----GCAGCGGC-GGugCC--UGCGGcG- -5'
6366 3' -61.6 NC_001847.1 + 129656 0.71 0.372224
Target:  5'- -cGGUCGagGuuGCgGCGGcCGCUGCc -3'
miRNA:   3'- gaCCAGCagCggCGgUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129608 0.69 0.464273
Target:  5'- aCUGGgc--CGCCGUCACGaGCGUCGCc -3'
miRNA:   3'- -GACCagcaGCGGCGGUGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 129468 0.74 0.274297
Target:  5'- gCUGG-CGgcCGCCGCCGCGcgcGACGgCGCg -3'
miRNA:   3'- -GACCaGCa-GCGGCGGUGC---CUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 129032 0.66 0.674254
Target:  5'- -aGGcgcUCG-CGCCGCgccuCGCGGGCGUcuCGCg -3'
miRNA:   3'- gaCC---AGCaGCGGCG----GUGCCUGCG--GCG- -5'
6366 3' -61.6 NC_001847.1 + 128807 0.7 0.455409
Target:  5'- -cGGUUGcCGCCGgggcacCCGCGuacGugGCCGCg -3'
miRNA:   3'- gaCCAGCaGCGGC------GGUGC---CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 128692 0.69 0.473226
Target:  5'- cCUGGccaCGUaCGCCGUCGCc-GCGCCGCc -3'
miRNA:   3'- -GACCa--GCA-GCGGCGGUGccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 128181 0.68 0.519211
Target:  5'- -cGGgCGgaagCGCCGCCGCG-ACcCCGCg -3'
miRNA:   3'- gaCCaGCa---GCGGCGGUGCcUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 127048 0.68 0.547636
Target:  5'- gCUGGcgccgCGUCGCCgaucucGCCGCGG-CGgUGCc -3'
miRNA:   3'- -GACCa----GCAGCGG------CGGUGCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 126673 0.7 0.455409
Target:  5'- -cGGcCGagCGCCGCCccCGGcccgGCGCCGCc -3'
miRNA:   3'- gaCCaGCa-GCGGCGGu-GCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 125688 0.68 0.538102
Target:  5'- uCUGGgggGUCGCCGCCGgGGuu-CUGCa -3'
miRNA:   3'- -GACCag-CAGCGGCGGUgCCugcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 125565 0.73 0.306708
Target:  5'- -cGGcUCGaUCGCgGCCGCGGGCGgCGg -3'
miRNA:   3'- gaCC-AGC-AGCGgCGGUGCCUGCgGCg -5'
6366 3' -61.6 NC_001847.1 + 125520 0.67 0.615542
Target:  5'- -gGGcCGgCGCgGCgGCGGGCGCaGCu -3'
miRNA:   3'- gaCCaGCaGCGgCGgUGCCUGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.