miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 125468 0.66 0.664504
Target:  5'- -gGGUCGgcggcaGCuCGCgGCGGGCGCgaggaCGCc -3'
miRNA:   3'- gaCCAGCag----CG-GCGgUGCCUGCG-----GCG- -5'
6366 3' -61.6 NC_001847.1 + 125419 0.68 0.547636
Target:  5'- -cGGUCG-CGUgGCaaGCGaGugGCCGCg -3'
miRNA:   3'- gaCCAGCaGCGgCGg-UGC-CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 125417 0.66 0.683972
Target:  5'- aCUGcccCGgCGCCGCCGgaGGAC-CCGCg -3'
miRNA:   3'- -GACca-GCaGCGGCGGUg-CCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 124864 0.72 0.32047
Target:  5'- gCUGGa-GUCGCUGCCGCucACGUCGCa -3'
miRNA:   3'- -GACCagCAGCGGCGGUGccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 124826 0.73 0.293403
Target:  5'- -gGGUCcaugGUUGCCGCCGCaGcacCGCCGCa -3'
miRNA:   3'- gaCCAG----CAGCGGCGGUGcCu--GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 124279 0.66 0.65473
Target:  5'- cCUGGgCGcccgCGcCCGCCGCGccucggccacGCGCCGCc -3'
miRNA:   3'- -GACCaGCa---GC-GGCGGUGCc---------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 124239 0.67 0.635141
Target:  5'- -cGGUaguacCG-CGCCGCCACcaGCuGCCGCa -3'
miRNA:   3'- gaCCA-----GCaGCGGCGGUGccUG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 123996 0.67 0.615542
Target:  5'- -cGGUaGUUuaGCCGCCGCaGcucCGCCGCg -3'
miRNA:   3'- gaCCAgCAG--CGGCGGUGcCu--GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 123467 0.71 0.388019
Target:  5'- -cGG-CGaCgGCCGCCGCGGGCucggcuggggccGCCGCa -3'
miRNA:   3'- gaCCaGCaG-CGGCGGUGCCUG------------CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 123276 0.66 0.693651
Target:  5'- gUGGcuuuuauacgcUCG-CGCCGcCCGCaGGGCGgCGCc -3'
miRNA:   3'- gACC-----------AGCaGCGGC-GGUG-CCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 123022 0.71 0.364492
Target:  5'- aCUGGuguccUCGUCcggggGCCgcuggaaguacgGCCGCGGGCGCCGg -3'
miRNA:   3'- -GACC-----AGCAG-----CGG------------CGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 122895 0.67 0.63416
Target:  5'- aCUGGUgGgcaucgcagcccUCGCCGUUcggguguGCGcGCGCCGCg -3'
miRNA:   3'- -GACCAgC------------AGCGGCGG-------UGCcUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 122660 0.72 0.334689
Target:  5'- uUGGcCGccccCGCCGCCACGcGGgaaGCCGCg -3'
miRNA:   3'- gACCaGCa---GCGGCGGUGC-CUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 122551 0.75 0.228227
Target:  5'- -cGGUCGcUgGCCGCaCGagugcgaGGGCGCCGCg -3'
miRNA:   3'- gaCCAGC-AgCGGCG-GUg------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 122130 0.72 0.349364
Target:  5'- -aGGUCGcgacgGCCGgCGCgcaGGGCGCCGCg -3'
miRNA:   3'- gaCCAGCag---CGGCgGUG---CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 121620 0.67 0.586246
Target:  5'- -cGGUUGcUGCCGCUGCuGcUGCCGCa -3'
miRNA:   3'- gaCCAGCaGCGGCGGUGcCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 121609 0.67 0.635141
Target:  5'- -aGcGUCG-CGCUGCCuaGCGG-CaGCCGCu -3'
miRNA:   3'- gaC-CAGCaGCGGCGG--UGCCuG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 121183 0.69 0.473226
Target:  5'- -aGGggCGg-GCuCGCCACGGGCcgcaGCCGCa -3'
miRNA:   3'- gaCCa-GCagCG-GCGGUGCCUG----CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 121080 0.67 0.592089
Target:  5'- gCUGGUgcugcugcugcuugCGcucugCGCCGCgACGGuaaacugcgcgcuGCGCCGCc -3'
miRNA:   3'- -GACCA--------------GCa----GCGGCGgUGCC-------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 120988 0.67 0.625339
Target:  5'- -cGGcCGUCgcccuagcgGCCGCCcaggcGCGGGCcCCGCc -3'
miRNA:   3'- gaCCaGCAG---------CGGCGG-----UGCCUGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.