miRNA display CGI


Results 81 - 100 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 120336 0.67 0.595989
Target:  5'- -aGGgcgccgCGcagcucCGCCGCUGCGGuuuuguACGCCGCg -3'
miRNA:   3'- gaCCa-----GCa-----GCGGCGGUGCC------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119904 0.7 0.452767
Target:  5'- gUGGcCGcCGCCGCCGCcGGCGCguacuucgucuauaCGCg -3'
miRNA:   3'- gACCaGCaGCGGCGGUGcCUGCG--------------GCG- -5'
6366 3' -61.6 NC_001847.1 + 119510 0.66 0.664504
Target:  5'- aCUGGUUcaUG-CGCCACGGGggcgucguucCGCCGUa -3'
miRNA:   3'- -GACCAGcaGCgGCGGUGCCU----------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119369 0.66 0.683002
Target:  5'- -cGG-CGcUUGCCGCCggcgaaaGCGGGcCGcCCGCg -3'
miRNA:   3'- gaCCaGC-AGCGGCGG-------UGCCU-GC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 119200 0.73 0.306708
Target:  5'- aUGGcgagcUCGUCGgCGCCGCGGcCaCCGCg -3'
miRNA:   3'- gACC-----AGCAGCgGCGGUGCCuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119140 0.83 0.067802
Target:  5'- aUGGcgagcUCGUCGgCGCCGCGGcCGCCGCg -3'
miRNA:   3'- gACC-----AGCAGCgGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119075 0.74 0.250389
Target:  5'- aCUGGagG-CGCCcagcagaggcGCCGCGGcCGCCGCg -3'
miRNA:   3'- -GACCagCaGCGG----------CGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 118916 0.68 0.566857
Target:  5'- -gGGcCGagGCCGggaCGCGGAgGCUGCa -3'
miRNA:   3'- gaCCaGCagCGGCg--GUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 118856 0.66 0.64494
Target:  5'- -cGGUauaCGUCGacCCGCCgGCGuacccGAUGCCGCg -3'
miRNA:   3'- gaCCA---GCAGC--GGCGG-UGC-----CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 118719 0.68 0.519211
Target:  5'- --aGUCGUCGCCgGCCucgcagacGCGGgaaaaGCGCUGCc -3'
miRNA:   3'- gacCAGCAGCGG-CGG--------UGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 118415 0.69 0.482265
Target:  5'- gUGGcCGUCGCCugcgGUCuCGG-CGCCGUg -3'
miRNA:   3'- gACCaGCAGCGG----CGGuGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 117757 0.71 0.404249
Target:  5'- -aGGUCGU-GCCGUCACG-ACGCacCGCg -3'
miRNA:   3'- gaCCAGCAgCGGCGGUGCcUGCG--GCG- -5'
6366 3' -61.6 NC_001847.1 + 117409 0.69 0.482265
Target:  5'- -aGGcCGUgGCCGCCuCGuACGCCGa -3'
miRNA:   3'- gaCCaGCAgCGGCGGuGCcUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 117244 0.66 0.64396
Target:  5'- uUGGcCGcCGUCGCCcuaauccugcucuGCGGG-GCCGCc -3'
miRNA:   3'- gACCaGCaGCGGCGG-------------UGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 116698 0.66 0.65473
Target:  5'- -cGGgCGUCGUCGCgUACGaGAUGCUGg -3'
miRNA:   3'- gaCCaGCAGCGGCG-GUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 116683 0.7 0.446637
Target:  5'- -gGGUC--CGgCGCUGCGGGCGCgGCa -3'
miRNA:   3'- gaCCAGcaGCgGCGGUGCCUGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 116654 0.67 0.615542
Target:  5'- gCUGGcgCG-CGCgCGCUACGacUGCCGCa -3'
miRNA:   3'- -GACCa-GCaGCG-GCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 116591 0.66 0.65473
Target:  5'- uCUGGgCGcagCGCUGCCgcucugcggcGCGGACgGCgGCg -3'
miRNA:   3'- -GACCaGCa--GCGGCGG----------UGCCUG-CGgCG- -5'
6366 3' -61.6 NC_001847.1 + 116528 0.68 0.557223
Target:  5'- cCUGcGcuacgCGcgCGCCgacGCCGCGGACGgCGCg -3'
miRNA:   3'- -GAC-Ca----GCa-GCGG---CGGUGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 116348 0.8 0.108308
Target:  5'- gCUGGcgcgCGcCGCCGCCGCGGAgcucgcgcugucggcCGCCGCc -3'
miRNA:   3'- -GACCa---GCaGCGGCGGUGCCU---------------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.