Results 41 - 60 of 678 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 3' | -61.6 | NC_001847.1 | + | 89165 | 0.74 | 0.268153 |
Target: 5'- aCUGcGUCGUCGCCGaCGCGcGCGCCu- -3' miRNA: 3'- -GAC-CAGCAGCGGCgGUGCcUGCGGcg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 45507 | 0.75 | 0.222952 |
Target: 5'- -cGGggCGggCGCCGCCGcCGGGCGgCGCg -3' miRNA: 3'- gaCCa-GCa-GCGGCGGU-GCCUGCgGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 33882 | 0.79 | 0.11561 |
Target: 5'- -aGGagG-CGCCGCCGCGcGugGCCGCg -3' miRNA: 3'- gaCCagCaGCGGCGGUGC-CugCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 32138 | 0.74 | 0.262121 |
Target: 5'- gCUGGgCGcCGCCGCgccCGCGcACGCCGCg -3' miRNA: 3'- -GACCaGCaGCGGCG---GUGCcUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 28464 | 0.8 | 0.101953 |
Target: 5'- aUGGcCGcCGUggcacgacgCGCCGCGGACGCCGCg -3' miRNA: 3'- gACCaGCaGCG---------GCGGUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 7243 | 0.72 | 0.32047 |
Target: 5'- gCUGGUCGg-GUgGCUguGCGGGCGCgGCg -3' miRNA: 3'- -GACCAGCagCGgCGG--UGCCUGCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 61002 | 0.78 | 0.14817 |
Target: 5'- --cGUCGagGCCGCCAUcGGCGCCGCg -3' miRNA: 3'- gacCAGCagCGGCGGUGcCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 34391 | 0.73 | 0.306708 |
Target: 5'- -cGG-CGgcCGCCGCCGCGGcagACGCgGCg -3' miRNA: 3'- gaCCaGCa-GCGGCGGUGCC---UGCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 133664 | 0.73 | 0.306708 |
Target: 5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3' miRNA: 3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 15562 | 0.73 | 0.293403 |
Target: 5'- -cGGcCGUCGg-GCCGCGGcCGCCGCu -3' miRNA: 3'- gaCCaGCAGCggCGGUGCCuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 78832 | 0.73 | 0.280553 |
Target: 5'- -cGGccuUCG-CGgcCCGCCGCGcGACGCCGCa -3' miRNA: 3'- gaCC---AGCaGC--GGCGGUGC-CUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 90235 | 0.73 | 0.280553 |
Target: 5'- -cGGUCGcggcCGCCGCCGCGGccugugacGCGCuCGUu -3' miRNA: 3'- gaCCAGCa---GCGGCGGUGCC--------UGCG-GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 134535 | 0.74 | 0.268153 |
Target: 5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3' miRNA: 3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 79924 | 0.74 | 0.2562 |
Target: 5'- ----gCGUCGCCGCCACGaaguACGUCGCg -3' miRNA: 3'- gaccaGCAGCGGCGGUGCc---UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 4400 | 0.74 | 0.249814 |
Target: 5'- -cGGUCGcCGCCGUCgacgccgacgGCGGcgagcgcGCGCCGCa -3' miRNA: 3'- gaCCAGCaGCGGCGG----------UGCC-------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 131961 | 0.75 | 0.233607 |
Target: 5'- gCUGcGcCGUCGCCuGCCGCGaGGCGCUGg -3' miRNA: 3'- -GAC-CaGCAGCGG-CGGUGC-CUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 122551 | 0.75 | 0.228227 |
Target: 5'- -cGGUCGcUgGCCGCaCGagugcgaGGGCGCCGCg -3' miRNA: 3'- gaCCAGC-AgCGGCG-GUg------CCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 80444 | 0.75 | 0.217781 |
Target: 5'- -cGcGUCGUCcuCC-CCGCGGGCGCCGCc -3' miRNA: 3'- gaC-CAGCAGc-GGcGGUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 53197 | 0.76 | 0.202881 |
Target: 5'- gUGG-CG-CGCCGCCACcucGACGCCGUc -3' miRNA: 3'- gACCaGCaGCGGCGGUGc--CUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 29442 | 0.76 | 0.184397 |
Target: 5'- gCUGGggCGUggCGCCGcCCGCGGccgaaGCGCCGCc -3' miRNA: 3'- -GACCa-GCA--GCGGC-GGUGCC-----UGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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