miRNA display CGI


Results 61 - 80 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 134535 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 59113 0.73 0.280553
Target:  5'- --cGUCGUCGCCGCCGCcgcuccgGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGCGGUGccug---CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5558 0.77 0.154477
Target:  5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31871 0.76 0.190691
Target:  5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3'
miRNA:   3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 38033 0.75 0.212713
Target:  5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3'
miRNA:   3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 72989 0.75 0.217781
Target:  5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3'
miRNA:   3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 55339 0.75 0.231982
Target:  5'- aUGGcCGcUCGCggcggugcugaacgCGCCGCGGGCGCCGg -3'
miRNA:   3'- gACCaGC-AGCG--------------GCGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 10379 0.75 0.239094
Target:  5'- -gGGUCGcCGCuCGCgGCGGG-GCCGCu -3'
miRNA:   3'- gaCCAGCaGCG-GCGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11837 0.74 0.250389
Target:  5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3'
miRNA:   3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 15922 0.74 0.262121
Target:  5'- cCUGcccCGcCGCC-CCGCGGugGCCGCg -3'
miRNA:   3'- -GACca-GCaGCGGcGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 36565 0.71 0.379277
Target:  5'- gCUGG-CGcCGCgCGCCuaccuggacgccgACGGcACGCCGCu -3'
miRNA:   3'- -GACCaGCaGCG-GCGG-------------UGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 63179 0.71 0.372224
Target:  5'- -cGGUCGcggUCGCgCGCCAUGGccgagcccGCGCgCGCu -3'
miRNA:   3'- gaCCAGC---AGCG-GCGGUGCC--------UGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 132367 0.73 0.286921
Target:  5'- cCUGGagGcCGCCGgCGgGGGCGCCGg -3'
miRNA:   3'- -GACCagCaGCGGCgGUgCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 76908 0.73 0.293403
Target:  5'- -cGGUCGcgCGCCGCCGC---UGCCGCc -3'
miRNA:   3'- gaCCAGCa-GCGGCGGUGccuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 34391 0.73 0.306708
Target:  5'- -cGG-CGgcCGCCGCCGCGGcagACGCgGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCC---UGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 7243 0.72 0.32047
Target:  5'- gCUGGUCGg-GUgGCUguGCGGGCGCgGCg -3'
miRNA:   3'- -GACCAGCagCGgCGG--UGCCUGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 134027 0.72 0.327522
Target:  5'- gCUGGUgcugGagGCCGCgGCGG-CGCCGCc -3'
miRNA:   3'- -GACCAg---CagCGGCGgUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 36889 0.72 0.333246
Target:  5'- gCUGG-CGacuacgcugcccCGCCGCCACGG-CGUCGCc -3'
miRNA:   3'- -GACCaGCa-----------GCGGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 42612 0.72 0.341969
Target:  5'- -gGGaCGgCGCCGCCGCGGaggggggcggcaGCGCCGa -3'
miRNA:   3'- gaCCaGCaGCGGCGGUGCC------------UGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 122130 0.72 0.349364
Target:  5'- -aGGUCGcgacgGCCGgCGCgcaGGGCGCCGCg -3'
miRNA:   3'- gaCCAGCag---CGGCgGUG---CCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.