Results 81 - 100 of 678 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 3' | -61.6 | NC_001847.1 | + | 77613 | 0.73 | 0.293403 |
Target: 5'- uCUGG-CGgCGCCGCUgggcgaggACGGcGCGCCGCc -3' miRNA: 3'- -GACCaGCaGCGGCGG--------UGCC-UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 32274 | 0.73 | 0.306708 |
Target: 5'- gUGGcUCG-CGCCGuCCGCGuGGCGCgGCc -3' miRNA: 3'- gACC-AGCaGCGGC-GGUGC-CUGCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 48669 | 0.73 | 0.313531 |
Target: 5'- cCUcGUCGUCcguGCCGCCGuCGG-CGCCGUc -3' miRNA: 3'- -GAcCAGCAG---CGGCGGU-GCCuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 62113 | 0.72 | 0.322573 |
Target: 5'- -aGGUUGUCcgcggccGCUGCCGCGGccugguuccgcgcccGCGCUGCg -3' miRNA: 3'- gaCCAGCAG-------CGGCGGUGCC---------------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 73716 | 0.72 | 0.327522 |
Target: 5'- -cGG-CGgCGCgGCCGCGGGCGUCGa -3' miRNA: 3'- gaCCaGCaGCGgCGGUGCCUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 42612 | 0.72 | 0.341969 |
Target: 5'- -gGGaCGgCGCCGCCGCGGaggggggcggcaGCGCCGa -3' miRNA: 3'- gaCCaGCaGCGGCGGUGCC------------UGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 122130 | 0.72 | 0.349364 |
Target: 5'- -aGGUCGcgacgGCCGgCGCgcaGGGCGCCGCg -3' miRNA: 3'- gaCCAGCag---CGGCgGUG---CCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 15922 | 0.74 | 0.262121 |
Target: 5'- cCUGcccCGcCGCC-CCGCGGugGCCGCg -3' miRNA: 3'- -GACca-GCaGCGGcGGUGCCugCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 11837 | 0.74 | 0.250389 |
Target: 5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3' miRNA: 3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 10379 | 0.75 | 0.239094 |
Target: 5'- -gGGUCGcCGCuCGCgGCGGG-GCCGCu -3' miRNA: 3'- gaCCAGCaGCG-GCGgUGCCUgCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 35933 | 0.71 | 0.388019 |
Target: 5'- gUGG-CGgcgCGCCGCCGCGcg-GCCGCc -3' miRNA: 3'- gACCaGCa--GCGGCGGUGCcugCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 3198 | 0.71 | 0.39527 |
Target: 5'- --cGcCGUCGCCGCCAucgcCGGcgcacgugccuccGCGCCGCc -3' miRNA: 3'- gacCaGCAGCGGCGGU----GCC-------------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 82694 | 0.71 | 0.396081 |
Target: 5'- aUGaGUCGggCGCCGCUcgcgaaGCGGGC-CCGCu -3' miRNA: 3'- gAC-CAGCa-GCGGCGG------UGCCUGcGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 56799 | 0.71 | 0.404249 |
Target: 5'- -gGGcUGuUCGCCGCCGCGG-CGCC-Ca -3' miRNA: 3'- gaCCaGC-AGCGGCGGUGCCuGCGGcG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 62478 | 0.7 | 0.412523 |
Target: 5'- -gGGcCGggGUCGCCgGCGGGCGgCCGCg -3' miRNA: 3'- gaCCaGCagCGGCGG-UGCCUGC-GGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 5558 | 0.77 | 0.154477 |
Target: 5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3' miRNA: 3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 31871 | 0.76 | 0.190691 |
Target: 5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3' miRNA: 3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 38033 | 0.75 | 0.212713 |
Target: 5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3' miRNA: 3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 72989 | 0.75 | 0.217781 |
Target: 5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3' miRNA: 3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 55339 | 0.75 | 0.231982 |
Target: 5'- aUGGcCGcUCGCggcggugcugaacgCGCCGCGGGCGCCGg -3' miRNA: 3'- gACCaGC-AGCG--------------GCGGUGCCUGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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