miRNA display CGI


Results 101 - 120 of 678 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 57686 0.71 0.404249
Target:  5'- gUGGUgcUgGgCGCCGCGGGUGCCGCg -3'
miRNA:   3'- gACCAgcAgCgGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 32896 0.7 0.412523
Target:  5'- -cGGUgCG-CGCCGCgCGCgagcgccuGGACGCCGUc -3'
miRNA:   3'- gaCCA-GCaGCGGCG-GUG--------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 30784 0.7 0.420901
Target:  5'- ----gCGUCuGCgGgCGCGGACGCCGCc -3'
miRNA:   3'- gaccaGCAG-CGgCgGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 84571 0.7 0.428528
Target:  5'- -cGGccuccUCGUCGUcagaggcgaCGCCGCGGuccagcaGCGCCGCu -3'
miRNA:   3'- gaCC-----AGCAGCG---------GCGGUGCC-------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 83470 0.7 0.43796
Target:  5'- -cGGcgcgcgCGUaCGCCGCCcuguuGCGGgcgcaGCGCCGCg -3'
miRNA:   3'- gaCCa-----GCA-GCGGCGG-----UGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 62113 0.72 0.322573
Target:  5'- -aGGUUGUCcgcggccGCUGCCGCGGccugguuccgcgcccGCGCUGCg -3'
miRNA:   3'- gaCCAGCAG-------CGGCGGUGCC---------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 48669 0.73 0.313531
Target:  5'- cCUcGUCGUCcguGCCGCCGuCGG-CGCCGUc -3'
miRNA:   3'- -GAcCAGCAG---CGGCGGU-GCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5558 0.77 0.154477
Target:  5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31871 0.76 0.190691
Target:  5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3'
miRNA:   3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 38033 0.75 0.212713
Target:  5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3'
miRNA:   3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 72989 0.75 0.217781
Target:  5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3'
miRNA:   3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 55339 0.75 0.231982
Target:  5'- aUGGcCGcUCGCggcggugcugaacgCGCCGCGGGCGCCGg -3'
miRNA:   3'- gACCaGC-AGCG--------------GCGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 10379 0.75 0.239094
Target:  5'- -gGGUCGcCGCuCGCgGCGGG-GCCGCu -3'
miRNA:   3'- gaCCAGCaGCG-GCGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11837 0.74 0.250389
Target:  5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3'
miRNA:   3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 15922 0.74 0.262121
Target:  5'- cCUGcccCGcCGCC-CCGCGGugGCCGCg -3'
miRNA:   3'- -GACca-GCaGCGGcGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134595 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 92795 0.73 0.280553
Target:  5'- -aGaGUaCGUCGCCGCCgcgcacACGGGCGCCcacaGCa -3'
miRNA:   3'- gaC-CA-GCAGCGGCGG------UGCCUGCGG----CG- -5'
6366 3' -61.6 NC_001847.1 + 8388 0.73 0.286921
Target:  5'- gUGGgCGUCuGCCGCguaggcUACGGGCaGCCGCa -3'
miRNA:   3'- gACCaGCAG-CGGCG------GUGCCUG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 77613 0.73 0.293403
Target:  5'- uCUGG-CGgCGCCGCUgggcgaggACGGcGCGCCGCc -3'
miRNA:   3'- -GACCaGCaGCGGCGG--------UGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 32274 0.73 0.306708
Target:  5'- gUGGcUCG-CGCCGuCCGCGuGGCGCgGCc -3'
miRNA:   3'- gACC-AGCaGCGGC-GGUGC-CUGCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.