Results 81 - 100 of 678 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 3' | -61.6 | NC_001847.1 | + | 125468 | 0.66 | 0.664504 |
Target: 5'- -gGGUCGgcggcaGCuCGCgGCGGGCGCgaggaCGCc -3' miRNA: 3'- gaCCAGCag----CG-GCGgUGCCUGCG-----GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 107987 | 0.66 | 0.664504 |
Target: 5'- uUGGgc-UgGCCGCCGCGGcuGCGCCc- -3' miRNA: 3'- gACCagcAgCGGCGGUGCC--UGCGGcg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 104514 | 0.66 | 0.664504 |
Target: 5'- ---uUCGgcgGCCGCCGCGuuugcGGCGCUGCg -3' miRNA: 3'- gaccAGCag-CGGCGGUGC-----CUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 82504 | 0.66 | 0.664504 |
Target: 5'- -aGGUCG-CGuCUGgCGCGG-CGCuCGCg -3' miRNA: 3'- gaCCAGCaGC-GGCgGUGCCuGCG-GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 15449 | 0.66 | 0.664504 |
Target: 5'- -gGGUcugacucucgcCGUCGCCuucggguCCugGGGgGCCGCc -3' miRNA: 3'- gaCCA-----------GCAGCGGc------GGugCCUgCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 73471 | 0.66 | 0.663528 |
Target: 5'- aUGGgcgcaUGUCucgaaccuucaugGCgGCCGCGGugGCgGCg -3' miRNA: 3'- gACCa----GCAG-------------CGgCGGUGCCugCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 85955 | 0.66 | 0.663528 |
Target: 5'- -aGGgcuacCGUCuugGCCGCCGCGuccauggucggcaGACGCgGCg -3' miRNA: 3'- gaCCa----GCAG---CGGCGGUGC-------------CUGCGgCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 46203 | 0.66 | 0.674254 |
Target: 5'- -aGGUCGgcgugucCGUCGCgCAUGGcgcagaGCCGCg -3' miRNA: 3'- gaCCAGCa------GCGGCG-GUGCCug----CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 73055 | 0.66 | 0.674254 |
Target: 5'- gCUGG-CGaaGCaacgCGCCGCGGGCGCgGa -3' miRNA: 3'- -GACCaGCagCG----GCGGUGCCUGCGgCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 90577 | 0.66 | 0.674254 |
Target: 5'- -aGGUCGaacgggaGCa-CCACGGGCGUCGUu -3' miRNA: 3'- gaCCAGCag-----CGgcGGUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 2971 | 0.66 | 0.674254 |
Target: 5'- -cGGcgCGcagCGCCGCCGgGGcCGgCGCu -3' miRNA: 3'- gaCCa-GCa--GCGGCGGUgCCuGCgGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 129032 | 0.66 | 0.674254 |
Target: 5'- -aGGcgcUCG-CGCCGCgccuCGCGGGCGUcuCGCg -3' miRNA: 3'- gaCC---AGCaGCGGCG----GUGCCUGCG--GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 103019 | 0.66 | 0.674254 |
Target: 5'- -cGG-CGcccagCGCCgGCgGCGGGCggGCCGCa -3' miRNA: 3'- gaCCaGCa----GCGG-CGgUGCCUG--CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 86769 | 0.66 | 0.674254 |
Target: 5'- -cGGccCGgCGgCGCCACGGucgugACGCUGCu -3' miRNA: 3'- gaCCa-GCaGCgGCGGUGCC-----UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 83209 | 0.66 | 0.674254 |
Target: 5'- -cGGcCGUCGCgccccgGCCACGauCGCCGUg -3' miRNA: 3'- gaCCaGCAGCGg-----CGGUGCcuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 81227 | 0.66 | 0.674254 |
Target: 5'- --cGUCGcCGUCGCCucCGGGCgggGCCGUc -3' miRNA: 3'- gacCAGCaGCGGCGGu-GCCUG---CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 66205 | 0.66 | 0.674254 |
Target: 5'- ---aUCGgCGCCGCCcagcggcggcuCGGGCGCgCGCa -3' miRNA: 3'- gaccAGCaGCGGCGGu----------GCCUGCG-GCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 114134 | 0.66 | 0.674254 |
Target: 5'- -gGGUCGcccgcacaGCCGCgCGCGG-UGCCGa -3' miRNA: 3'- gaCCAGCag------CGGCG-GUGCCuGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 108752 | 0.66 | 0.674254 |
Target: 5'- -cGG-CGUUcCUGCCGCgcuGGGCGCCGg -3' miRNA: 3'- gaCCaGCAGcGGCGGUG---CCUGCGGCg -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 58182 | 0.66 | 0.663528 |
Target: 5'- -gGGUCGUCaaaGCCGCCuuCGGccagcagGCGCUccggGCg -3' miRNA: 3'- gaCCAGCAG---CGGCGGu-GCC-------UGCGG----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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