miRNA display CGI


Results 21 - 40 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 28369 0.66 0.693651
Target:  5'- -cGG-CGcccUCGCCGCCggagACGGcgcccccccCGCCGCg -3'
miRNA:   3'- gaCCaGC---AGCGGCGG----UGCCu--------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 99696 0.66 0.693651
Target:  5'- ----gCGcCGCgGCCGCGucGCGCCGCa -3'
miRNA:   3'- gaccaGCaGCGgCGGUGCc-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 69708 0.66 0.693651
Target:  5'- -cGGUC--CGCgGCgCGCGGcUGCCGCc -3'
miRNA:   3'- gaCCAGcaGCGgCG-GUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 65853 0.66 0.693651
Target:  5'- -cGGUCcgcccgcaCGCCGCguagaggaagccCGCGGcCGCCGCc -3'
miRNA:   3'- gaCCAGca------GCGGCG------------GUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 98484 0.66 0.691718
Target:  5'- -gGGUuccagcaCG-CGCCGCCAggcuucgUGGACGCCa- -3'
miRNA:   3'- gaCCA-------GCaGCGGCGGU-------GCCUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 101349 0.66 0.687849
Target:  5'- uCUGGgcUCGgggcugcaugcgcgCGCuugCGCCGCGGGgGCUGCc -3'
miRNA:   3'- -GACC--AGCa-------------GCG---GCGGUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 84615 0.66 0.687849
Target:  5'- nCUG--CGUCGCCuucgagcggggccauGCCGCGGcUGCUGCg -3'
miRNA:   3'- -GACcaGCAGCGG---------------CGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28503 0.66 0.683972
Target:  5'- uCUGG-CGaggCGUgGCC-CGGcagcGCGCCGCc -3'
miRNA:   3'- -GACCaGCa--GCGgCGGuGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 474 0.66 0.683972
Target:  5'- ---uUCGgCGCCGUCAUGGGUGcCCGCg -3'
miRNA:   3'- gaccAGCaGCGGCGGUGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 104976 0.66 0.683972
Target:  5'- -aGGUCcgccgagCGCCacgcacccaggGCgCACGGcGCGCCGCg -3'
miRNA:   3'- gaCCAGca-----GCGG-----------CG-GUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 86514 0.66 0.683972
Target:  5'- --cGUCG-CGCgGCgGCuGGGCGcCCGCg -3'
miRNA:   3'- gacCAGCaGCGgCGgUG-CCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 131316 0.66 0.683972
Target:  5'- uCUGG-CGaggCGUgGCC-CGGcagcGCGCCGCc -3'
miRNA:   3'- -GACCaGCa--GCGgCGGuGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 30405 0.66 0.683972
Target:  5'- gCUGG-CGcUgGCCGCCggcaagcucgugGCGGGCGCgGa -3'
miRNA:   3'- -GACCaGC-AgCGGCGG------------UGCCUGCGgCg -5'
6366 3' -61.6 NC_001847.1 + 49502 0.66 0.683972
Target:  5'- cCUGaUCGgCGCCGCUucgcCGGGCGCgGg -3'
miRNA:   3'- -GACcAGCaGCGGCGGu---GCCUGCGgCg -5'
6366 3' -61.6 NC_001847.1 + 66348 0.66 0.683972
Target:  5'- ----cCGUCGgcCCGCUcgcGCGGcCGCCGCg -3'
miRNA:   3'- gaccaGCAGC--GGCGG---UGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 11337 0.66 0.683972
Target:  5'- -aGGaCGgCGCCuGCCGCuGcCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGG-CGGUGcCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 125417 0.66 0.683972
Target:  5'- aCUGcccCGgCGCCGCCGgaGGAC-CCGCg -3'
miRNA:   3'- -GACca-GCaGCGGCGGUg-CCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 108805 0.66 0.683972
Target:  5'- gCUGcaUGUaCGCCGCCuucgcgcgccuGgGGACGCUGCc -3'
miRNA:   3'- -GACcaGCA-GCGGCGG-----------UgCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132675 0.66 0.683972
Target:  5'- -cGG-CGggggCGCCGCCGCccgcucgaucgGGAgcuCGCUGCg -3'
miRNA:   3'- gaCCaGCa---GCGGCGGUG-----------CCU---GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 95953 0.66 0.683972
Target:  5'- gCUGGcgggcgagCGUgagcgcagcagcCGCUGCCGCGGcuGCGCgGCc -3'
miRNA:   3'- -GACCa-------GCA------------GCGGCGGUGCC--UGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.