miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 5' -49.6 NC_001847.1 + 30849 0.67 0.989226
Target:  5'- -cGAGGCGCC-GCCGCUGC-GGcUCUg -3'
miRNA:   3'- ccUUCUGUGGaCGGUGAUGuUCuAGA- -5'
6366 5' -49.6 NC_001847.1 + 132141 0.67 0.989226
Target:  5'- uGGgcGGCGCugCUGCCGC-GCAGGGUg- -3'
miRNA:   3'- -CCuuCUGUG--GACGGUGaUGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 132678 0.67 0.987715
Target:  5'- cGggGGCGCC-GCCGCccGCucGAUCg -3'
miRNA:   3'- cCuuCUGUGGaCGGUGa-UGuuCUAGa -5'
6366 5' -49.6 NC_001847.1 + 33375 0.67 0.987715
Target:  5'- cGGAAGGCG-CUGCCGC--CAAGAa-- -3'
miRNA:   3'- -CCUUCUGUgGACGGUGauGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 81244 0.67 0.987555
Target:  5'- cGGGccAGGCuggGCCUGCCGCUGCuuuccggGAGAg-- -3'
miRNA:   3'- -CCU--UCUG---UGGACGGUGAUG-------UUCUaga -5'
6366 5' -49.6 NC_001847.1 + 114232 0.68 0.986045
Target:  5'- uGAGGcCGCCgaguguguguuuUGCCGCUGCGGGggCg -3'
miRNA:   3'- cCUUCuGUGG------------ACGGUGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 30440 0.68 0.979985
Target:  5'- cGGAGGCGCCgggGCUGC-ACGAGGUg- -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 48046 0.69 0.974977
Target:  5'- cGAAGACACCuUGUagaaaaGCUGCGGGcgCg -3'
miRNA:   3'- cCUUCUGUGG-ACGg-----UGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 108858 0.69 0.972155
Target:  5'- -cGAGuCACUUGCCGCaGCGAGcgCUa -3'
miRNA:   3'- ccUUCuGUGGACGGUGaUGUUCuaGA- -5'
6366 5' -49.6 NC_001847.1 + 82103 0.69 0.972155
Target:  5'- cGGAGGGCGCCUGCguUUGCGc----- -3'
miRNA:   3'- -CCUUCUGUGGACGguGAUGUucuaga -5'
6366 5' -49.6 NC_001847.1 + 130626 0.69 0.972155
Target:  5'- cGAGGGCGCCgagGCCGaagACGcggAGAUCg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUga-UGU---UCUAGa -5'
6366 5' -49.6 NC_001847.1 + 27813 0.69 0.972155
Target:  5'- cGAGGGCGCCgagGCCGaagACGcggAGAUCg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUga-UGU---UCUAGa -5'
6366 5' -49.6 NC_001847.1 + 99789 0.69 0.969111
Target:  5'- cGGggGGCAgC-GCCugUgguGCGGGGUCg -3'
miRNA:   3'- -CCuuCUGUgGaCGGugA---UGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 69745 0.69 0.969111
Target:  5'- cGAAGugGCCUGCCACcGCGc----- -3'
miRNA:   3'- cCUUCugUGGACGGUGaUGUucuaga -5'
6366 5' -49.6 NC_001847.1 + 33762 0.69 0.968794
Target:  5'- --uGGACGCgcuguugCUGCCGCUGCAGGGcuUCg -3'
miRNA:   3'- ccuUCUGUG-------GACGGUGAUGUUCU--AGa -5'
6366 5' -49.6 NC_001847.1 + 57129 0.69 0.963759
Target:  5'- uGGggGACGCCauggccgugacguacUGCCACgagcuggGCGAGGg-- -3'
miRNA:   3'- -CCuuCUGUGG---------------ACGGUGa------UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 43268 0.7 0.958572
Target:  5'- cGGggGGCACCUGCUGCgACGc----- -3'
miRNA:   3'- -CCuuCUGUGGACGGUGaUGUucuaga -5'
6366 5' -49.6 NC_001847.1 + 31290 0.7 0.954569
Target:  5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3'
miRNA:   3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 134103 0.7 0.954569
Target:  5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3'
miRNA:   3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 34118 0.7 0.948538
Target:  5'- cGGAGccugcGGCGCCUGCCGCgguggccgccgcgGCGAGcgCg -3'
miRNA:   3'- -CCUU-----CUGUGGACGGUGa------------UGUUCuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.