miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 4324 0.7 0.829403
Target:  5'- cUGCGGGUAGUgcuccGCCAuguAGggCgCCAGCu -3'
miRNA:   3'- -ACGUCCGUCAa----CGGUu--UCuaG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 81982 0.7 0.820435
Target:  5'- cGCGGGCGG-UGCuCGGAGAcUUCAGCu -3'
miRNA:   3'- aCGUCCGUCaACG-GUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 9931 0.7 0.820435
Target:  5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3'
miRNA:   3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 119574 0.7 0.820435
Target:  5'- cUGCGGGCAGcggcgGCCGcGG--CCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18024 0.7 0.838171
Target:  5'- gGgGGGC-GUUgcGCCGGuGGUCCCAGCg -3'
miRNA:   3'- aCgUCCGuCAA--CGGUUuCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 96572 0.69 0.893259
Target:  5'- cUGCuGGCcGUgUGCCuGGGcgCCCGGCg -3'
miRNA:   3'- -ACGuCCGuCA-ACGGuUUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 31112 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 106960 0.69 0.878713
Target:  5'- cGCAGGCGcGcgGCCGccAGGUaaCCCAACg -3'
miRNA:   3'- aCGUCCGU-CaaCGGUu-UCUA--GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18734 0.69 0.863186
Target:  5'- aGCGGGCGGUUGauucuCCAGaggugcgugugcAGGUCCUcGCg -3'
miRNA:   3'- aCGUCCGUCAAC-----GGUU------------UCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 133925 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 132580 0.68 0.913156
Target:  5'- cGCAGGCGcccgcGCCGAAGAcagCCCGc- -3'
miRNA:   3'- aCGUCCGUcaa--CGGUUUCUa--GGGUug -5'
6367 3' -52.1 NC_001847.1 + 118955 0.68 0.925102
Target:  5'- cGCGGGcCAGUU-CCGAuucgGGGUCCgCGGCc -3'
miRNA:   3'- aCGUCC-GUCAAcGGUU----UCUAGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 105704 0.68 0.925102
Target:  5'- cGCGGGCGGc-GCCAcgc--CCCAGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 103136 0.68 0.925102
Target:  5'- cGCGGGCcgccGgcGCgCGAAGGUCCUcGCg -3'
miRNA:   3'- aCGUCCGu---CaaCG-GUUUCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 101903 0.68 0.925102
Target:  5'- gGCAGcGgAGgcGCCGcGGcgCCCGGCg -3'
miRNA:   3'- aCGUC-CgUCaaCGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 31427 0.68 0.919262
Target:  5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 3569 0.68 0.900152
Target:  5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3'
miRNA:   3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 32991 0.68 0.900152
Target:  5'- gGCGGGCAGggcgGCCGGAGcggCCgGGg -3'
miRNA:   3'- aCGUCCGUCaa--CGGUUUCua-GGgUUg -5'
6367 3' -52.1 NC_001847.1 + 51531 0.68 0.919262
Target:  5'- gGCAGGCGGggGC---GGcgCCCAGg -3'
miRNA:   3'- aCGUCCGUCaaCGguuUCuaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 15894 0.68 0.906785
Target:  5'- cGCGGGCGcc-GCCAuaaucaGUCCCAGCu -3'
miRNA:   3'- aCGUCCGUcaaCGGUuuc---UAGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.