Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 6871 | 0.67 | 0.930675 |
Target: 5'- cGCGGGUAGggccUUGCCGAGGAgcagugCgUCGGCg -3' miRNA: 3'- aCGUCCGUC----AACGGUUUCUa-----G-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 25182 | 0.67 | 0.935981 |
Target: 5'- aGCAGGUAGcagcugGCCAgcGAgCCCcGCg -3' miRNA: 3'- aCGUCCGUCaa----CGGUuuCUaGGGuUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 116761 | 0.67 | 0.940529 |
Target: 5'- cGCAGGCgAGgacGCCGAGGcAUCgggcccgCCGACg -3' miRNA: 3'- aCGUCCG-UCaa-CGGUUUC-UAG-------GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 59499 | 0.67 | 0.950312 |
Target: 5'- gGCAGGgGGUgcGCCGAGGccgCaCCGGCu -3' miRNA: 3'- aCGUCCgUCAa-CGGUUUCua-G-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 85208 | 0.67 | 0.950312 |
Target: 5'- gGCAgcccGGCGG-UGCaAAAGAgCCCGACg -3' miRNA: 3'- aCGU----CCGUCaACGgUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 14541 | 0.67 | 0.930675 |
Target: 5'- cUGCccGCGGUgccGCCGuAGAUgCCGACg -3' miRNA: 3'- -ACGucCGUCAa--CGGUuUCUAgGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 68982 | 0.67 | 0.930675 |
Target: 5'- cGCGGGCAcg-GCCG-AGAgcacgUCCAGCa -3' miRNA: 3'- aCGUCCGUcaaCGGUuUCUa----GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18348 | 0.67 | 0.941021 |
Target: 5'- cGCAGucGCGGUcGCCcAAGAUCgUCGGCg -3' miRNA: 3'- aCGUC--CGUCAaCGGuUUCUAG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 90493 | 0.67 | 0.945798 |
Target: 5'- gUGCAGGCGGggcagcaGCCuccGAUgCCCAGa -3' miRNA: 3'- -ACGUCCGUCaa-----CGGuuuCUA-GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 57664 | 0.67 | 0.945798 |
Target: 5'- gGCcGGCGGgccggGCCG-GGcgCCCGGCg -3' miRNA: 3'- aCGuCCGUCaa---CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 54272 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCGuGcUGCCGGAcGGcCUCGACg -3' miRNA: 3'- aCGUCCGU-CaACGGUUU-CUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 80236 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCcacGUUGCC--GGGUCgaCGGCg -3' miRNA: 3'- aCGUCCGu--CAACGGuuUCUAGg-GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 32212 | 0.67 | 0.950312 |
Target: 5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3' miRNA: 3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 49842 | 0.67 | 0.950312 |
Target: 5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3' miRNA: 3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 47525 | 0.66 | 0.972155 |
Target: 5'- cGCAGccCGGgcGCCAAAGccgccGUCUCAACg -3' miRNA: 3'- aCGUCc-GUCaaCGGUUUC-----UAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 25128 | 0.66 | 0.954569 |
Target: 5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3' miRNA: 3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 17039 | 0.66 | 0.956201 |
Target: 5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3' miRNA: 3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22121 | 0.66 | 0.965837 |
Target: 5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3' miRNA: 3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 30122 | 0.66 | 0.958572 |
Target: 5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3' miRNA: 3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15145 | 0.66 | 0.965837 |
Target: 5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3' miRNA: 3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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