Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 47550 | 0.66 | 0.958572 |
Target: 5'- aGCAcGGCGGgcG-CGGGGAgCCCGGCg -3' miRNA: 3'- aCGU-CCGUCaaCgGUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 48201 | 0.66 | 0.958572 |
Target: 5'- cGCcGGCGGccaggGCCGAGGAgCgCAGCg -3' miRNA: 3'- aCGuCCGUCaa---CGGUUUCUaGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 132935 | 0.66 | 0.958572 |
Target: 5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3' miRNA: 3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 1107 | 0.66 | 0.958572 |
Target: 5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3' miRNA: 3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 115083 | 0.66 | 0.958572 |
Target: 5'- cGCAGGCAGcgagcgcauuuUUGCCc--GcgCCCAGg -3' miRNA: 3'- aCGUCCGUC-----------AACGGuuuCuaGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 30122 | 0.66 | 0.958572 |
Target: 5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3' miRNA: 3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 103920 | 0.66 | 0.958572 |
Target: 5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3' miRNA: 3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22601 | 0.66 | 0.958572 |
Target: 5'- gUGCuucucGGCAGUcaucaggGCCAAAGGaaaaucggUCCCAGg -3' miRNA: 3'- -ACGu----CCGUCAa------CGGUUUCU--------AGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 78371 | 0.66 | 0.961226 |
Target: 5'- gGCGGGCGGgcaaucgcggcgcaUgGCCGAGGAcCCCGccGCu -3' miRNA: 3'- aCGUCCGUC--------------AaCGGUUUCUaGGGU--UG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 60845 | 0.66 | 0.962326 |
Target: 5'- cGCGGcGCugcgcGgcGCCAGGGcgUCCAGCg -3' miRNA: 3'- aCGUC-CGu----CaaCGGUUUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 127294 | 0.66 | 0.962326 |
Target: 5'- cUGCAGGCGccaccGgcggUGCCGGAGAcacggcgaCCGGCg -3' miRNA: 3'- -ACGUCCGU-----Ca---ACGGUUUCUag------GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 124934 | 0.66 | 0.965837 |
Target: 5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3' miRNA: 3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 42741 | 0.66 | 0.965837 |
Target: 5'- cGCGGGCGGcgggGCgGAcagcAGAUCCagGACg -3' miRNA: 3'- aCGUCCGUCaa--CGgUU----UCUAGGg-UUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22121 | 0.66 | 0.965837 |
Target: 5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3' miRNA: 3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15145 | 0.66 | 0.965837 |
Target: 5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3' miRNA: 3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 126780 | 0.66 | 0.967175 |
Target: 5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3' miRNA: 3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 23967 | 0.66 | 0.967175 |
Target: 5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3' miRNA: 3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 43914 | 0.66 | 0.967829 |
Target: 5'- cUGCAGGCGGaccCCGAAGuguuguucgcauuUUCCGACg -3' miRNA: 3'- -ACGUCCGUCaacGGUUUCu------------AGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 63138 | 0.66 | 0.969111 |
Target: 5'- aGC-GGCuGUgGCaccGGAUCCCGGCg -3' miRNA: 3'- aCGuCCGuCAaCGguuUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 31108 | 0.66 | 0.969111 |
Target: 5'- gGCAGcGCGGUggcaUGCCuucGGUCCUcGCu -3' miRNA: 3'- aCGUC-CGUCA----ACGGuuuCUAGGGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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