Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 31427 | 0.68 | 0.919262 |
Target: 5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3' miRNA: 3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 59546 | 0.68 | 0.919262 |
Target: 5'- gGCAGGCGGUgggggcgGCgGGGGcgGUgCCGGCg -3' miRNA: 3'- aCGUCCGUCAa------CGgUUUC--UAgGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 77464 | 0.68 | 0.913156 |
Target: 5'- gGCugGGGCGGgcGCCG-GGcgCCCGGCc -3' miRNA: 3'- aCG--UCCGUCaaCGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 9740 | 0.68 | 0.913156 |
Target: 5'- cGCcgGGGCAGUcGCCGucGGUCCaccuCGACc -3' miRNA: 3'- aCG--UCCGUCAaCGGUuuCUAGG----GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 132580 | 0.68 | 0.913156 |
Target: 5'- cGCAGGCGcccgcGCCGAAGAcagCCCGc- -3' miRNA: 3'- aCGUCCGUcaa--CGGUUUCUa--GGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22281 | 0.68 | 0.913156 |
Target: 5'- cGUAGGCAGc-GCCGccGAggCCGACa -3' miRNA: 3'- aCGUCCGUCaaCGGUuuCUagGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 34608 | 0.68 | 0.906785 |
Target: 5'- gGCGcGGCGGcgcGCCGAGGAagUCCGGCg -3' miRNA: 3'- aCGU-CCGUCaa-CGGUUUCUa-GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15894 | 0.68 | 0.906785 |
Target: 5'- cGCGGGCGcc-GCCAuaaucaGUCCCAGCu -3' miRNA: 3'- aCGUCCGUcaaCGGUuuc---UAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 120254 | 0.68 | 0.900152 |
Target: 5'- cUGCAGGCGGgcuuccgUGUCGGGGcUUUCGACc -3' miRNA: 3'- -ACGUCCGUCa------ACGGUUUCuAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 32991 | 0.68 | 0.900152 |
Target: 5'- gGCGGGCAGggcgGCCGGAGcggCCgGGg -3' miRNA: 3'- aCGUCCGUCaa--CGGUUUCua-GGgUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 128800 | 0.68 | 0.900152 |
Target: 5'- cGCGGcGCGGUUGCCGccGGggcaCCCGcguACg -3' miRNA: 3'- aCGUC-CGUCAACGGUuuCUa---GGGU---UG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 3569 | 0.68 | 0.900152 |
Target: 5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3' miRNA: 3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 106382 | 0.68 | 0.900152 |
Target: 5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3' miRNA: 3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 54245 | 0.68 | 0.900152 |
Target: 5'- cGUGGGCAGcgcUGCgGuGGcgCCCGACg -3' miRNA: 3'- aCGUCCGUCa--ACGgUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 96572 | 0.69 | 0.893259 |
Target: 5'- cUGCuGGCcGUgUGCCuGGGcgCCCGGCg -3' miRNA: 3'- -ACGuCCGuCA-ACGGuUUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 133925 | 0.69 | 0.886111 |
Target: 5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3' miRNA: 3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 31112 | 0.69 | 0.886111 |
Target: 5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3' miRNA: 3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 106960 | 0.69 | 0.878713 |
Target: 5'- cGCAGGCGcGcgGCCGccAGGUaaCCCAACg -3' miRNA: 3'- aCGUCCGU-CaaCGGUu-UCUA--GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18734 | 0.69 | 0.863186 |
Target: 5'- aGCGGGCGGUUGauucuCCAGaggugcgugugcAGGUCCUcGCg -3' miRNA: 3'- aCGUCCGUCAAC-----GGUU------------UCUAGGGuUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 34522 | 0.7 | 0.85507 |
Target: 5'- aGcCAGGCGGUcGCCAGGG--CCCGAg -3' miRNA: 3'- aC-GUCCGUCAaCGGUUUCuaGGGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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