miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 34608 0.68 0.906785
Target:  5'- gGCGcGGCGGcgcGCCGAGGAagUCCGGCg -3'
miRNA:   3'- aCGU-CCGUCaa-CGGUUUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 36243 0.67 0.945798
Target:  5'- cGCAGGU---UGCCGA-GcUCCCGGCc -3'
miRNA:   3'- aCGUCCGucaACGGUUuCuAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 41820 0.74 0.603944
Target:  5'- cGCGGGCGGgcGgCGcGGGUCCCAGg -3'
miRNA:   3'- aCGUCCGUCaaCgGUuUCUAGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 42741 0.66 0.965837
Target:  5'- cGCGGGCGGcgggGCgGAcagcAGAUCCagGACg -3'
miRNA:   3'- aCGUCCGUCaa--CGgUU----UCUAGGg-UUG- -5'
6367 3' -52.1 NC_001847.1 + 43914 0.66 0.967829
Target:  5'- cUGCAGGCGGaccCCGAAGuguuguucgcauuUUCCGACg -3'
miRNA:   3'- -ACGUCCGUCaacGGUUUCu------------AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47525 0.66 0.972155
Target:  5'- cGCAGccCGGgcGCCAAAGccgccGUCUCAACg -3'
miRNA:   3'- aCGUCc-GUCaaCGGUUUC-----UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47550 0.66 0.958572
Target:  5'- aGCAcGGCGGgcG-CGGGGAgCCCGGCg -3'
miRNA:   3'- aCGU-CCGUCaaCgGUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47597 0.74 0.625548
Target:  5'- gGCcGGCGGcagGUCGcAGGAUCCCAGCg -3'
miRNA:   3'- aCGuCCGUCaa-CGGU-UUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 48201 0.66 0.958572
Target:  5'- cGCcGGCGGccaggGCCGAGGAgCgCAGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUUUCUaGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 49842 0.67 0.950312
Target:  5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3'
miRNA:   3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5'
6367 3' -52.1 NC_001847.1 + 51531 0.68 0.919262
Target:  5'- gGCAGGCGGggGC---GGcgCCCAGg -3'
miRNA:   3'- aCGUCCGUCaaCGguuUCuaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 52195 0.74 0.636363
Target:  5'- cGCAGGCGGccugGCCGcGGGUCgCGGCc -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 52914 0.72 0.752866
Target:  5'- cGCGGGCAGcgGCuCGGGGcgCCCGc- -3'
miRNA:   3'- aCGUCCGUCaaCG-GUUUCuaGGGUug -5'
6367 3' -52.1 NC_001847.1 + 54245 0.68 0.900152
Target:  5'- cGUGGGCAGcgcUGCgGuGGcgCCCGACg -3'
miRNA:   3'- aCGUCCGUCa--ACGgUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 54272 0.67 0.945798
Target:  5'- cGCGGGCGuGcUGCCGGAcGGcCUCGACg -3'
miRNA:   3'- aCGUCCGU-CaACGGUUU-CUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 57664 0.67 0.945798
Target:  5'- gGCcGGCGGgccggGCCG-GGcgCCCGGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 59499 0.67 0.950312
Target:  5'- gGCAGGgGGUgcGCCGAGGccgCaCCGGCu -3'
miRNA:   3'- aCGUCCgUCAa-CGGUUUCua-G-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 59546 0.68 0.919262
Target:  5'- gGCAGGCGGUgggggcgGCgGGGGcgGUgCCGGCg -3'
miRNA:   3'- aCGUCCGUCAa------CGgUUUC--UAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 60193 0.73 0.657971
Target:  5'- uUGCGGGCAGUUgaugacGCCGAcGAaaaacagCCCGGCg -3'
miRNA:   3'- -ACGUCCGUCAA------CGGUUuCUa------GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 60845 0.66 0.962326
Target:  5'- cGCGGcGCugcgcGgcGCCAGGGcgUCCAGCg -3'
miRNA:   3'- aCGUC-CGu----CaaCGGUUUCuaGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.