miRNA: 3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
miRNA: 3'- -ACGUCCGuCaaCGguuUCUa-GGGUUG- -5'
miRNA: 3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5'
miRNA: 3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5'
Results 101 - 104 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6367 | 3' | -52.1 | NC_001847.1 | + | 133925 | 0.69 | 0.886111 |
|
Target: 5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3' miRNA: 3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5' |
|||||||
| 6367 | 3' | -52.1 | NC_001847.1 | + | 134169 | 0.66 | 0.972155 |
|
Target: 5'- gUGCGGGCcGgcGCau-AGAcgCCCGGCg -3' miRNA: 3'- -ACGUCCGuCaaCGguuUCUa-GGGUUG- -5' |
|||||||
| 6367 | 3' | -52.1 | NC_001847.1 | + | 134240 | 0.68 | 0.919262 |
|
Target: 5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3' miRNA: 3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5' |
|||||||
| 6367 | 3' | -52.1 | NC_001847.1 | + | 135025 | 0.67 | 0.950312 |
|
Target: 5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3' miRNA: 3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home