miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 114925 1.11 0.003468
Target:  5'- cUGCAGGCAGUUGCCAAAGAUCCCAACg -3'
miRNA:   3'- -ACGUCCGUCAACGGUUUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 106960 0.69 0.878713
Target:  5'- cGCAGGCGcGcgGCCGccAGGUaaCCCAACg -3'
miRNA:   3'- aCGUCCGU-CaaCGGUu-UCUA--GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 106382 0.68 0.900152
Target:  5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3'
miRNA:   3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 105704 0.68 0.925102
Target:  5'- cGCGGGCGGc-GCCAcgc--CCCAGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 103920 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 103136 0.68 0.925102
Target:  5'- cGCGGGCcgccGgcGCgCGAAGGUCCUcGCg -3'
miRNA:   3'- aCGUCCGu---CaaCG-GUUUCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 102547 0.71 0.76296
Target:  5'- -cCAGGCAGaUGCagcacGAUCCCAGCu -3'
miRNA:   3'- acGUCCGUCaACGguuu-CUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 101903 0.68 0.925102
Target:  5'- gGCAGcGgAGgcGCCGcGGcgCCCGGCg -3'
miRNA:   3'- aCGUC-CgUCaaCGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 101007 0.73 0.70083
Target:  5'- cGCGgcGGCAGUuacUGCCGccgccgcggccGGGGUCCCAAUu -3'
miRNA:   3'- aCGU--CCGUCA---ACGGU-----------UUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 98464 0.67 0.930675
Target:  5'- gUGUAGgGCAug-GCCAGcucGGGUUCCAGCa -3'
miRNA:   3'- -ACGUC-CGUcaaCGGUU---UCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 96572 0.69 0.893259
Target:  5'- cUGCuGGCcGUgUGCCuGGGcgCCCGGCg -3'
miRNA:   3'- -ACGuCCGuCA-ACGGuUUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 90493 0.67 0.945798
Target:  5'- gUGCAGGCGGggcagcaGCCuccGAUgCCCAGa -3'
miRNA:   3'- -ACGUCCGUCaa-----CGGuuuCUA-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 85208 0.67 0.950312
Target:  5'- gGCAgcccGGCGG-UGCaAAAGAgCCCGACg -3'
miRNA:   3'- aCGU----CCGUCaACGgUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 81982 0.7 0.820435
Target:  5'- cGCGGGCGG-UGCuCGGAGAcUUCAGCu -3'
miRNA:   3'- aCGUCCGUCaACG-GUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 80236 0.67 0.945798
Target:  5'- cGCGGGCcacGUUGCC--GGGUCgaCGGCg -3'
miRNA:   3'- aCGUCCGu--CAACGGuuUCUAGg-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 78371 0.66 0.961226
Target:  5'- gGCGGGCGGgcaaucgcggcgcaUgGCCGAGGAcCCCGccGCu -3'
miRNA:   3'- aCGUCCGUC--------------AaCGGUUUCUaGGGU--UG- -5'
6367 3' -52.1 NC_001847.1 + 77464 0.68 0.913156
Target:  5'- gGCugGGGCGGgcGCCG-GGcgCCCGGCc -3'
miRNA:   3'- aCG--UCCGUCaaCGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 76219 0.67 0.930675
Target:  5'- aGCAGcGCGcgUGCCGAccucGUCCCGACc -3'
miRNA:   3'- aCGUC-CGUcaACGGUUuc--UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 71081 0.75 0.571735
Target:  5'- gGCgAGGCGGccgGCCAGGGcgUCCAGCg -3'
miRNA:   3'- aCG-UCCGUCaa-CGGUUUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 70699 0.72 0.742652
Target:  5'- cGCGGGCGGcgGCgGGGGcgCCCGcgGCg -3'
miRNA:   3'- aCGUCCGUCaaCGgUUUCuaGGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.