Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 22601 | 0.66 | 0.958572 |
Target: 5'- gUGCuucucGGCAGUcaucaggGCCAAAGGaaaaucggUCCCAGg -3' miRNA: 3'- -ACGu----CCGUCAa------CGGUUUCU--------AGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22281 | 0.68 | 0.913156 |
Target: 5'- cGUAGGCAGc-GCCGccGAggCCGACa -3' miRNA: 3'- aCGUCCGUCaaCGGUuuCUagGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22121 | 0.66 | 0.965837 |
Target: 5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3' miRNA: 3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 20518 | 0.7 | 0.829403 |
Target: 5'- cGCGGGCGGggGCCcacugGAAGGacgugaacuUCUCGGCg -3' miRNA: 3'- aCGUCCGUCaaCGG-----UUUCU---------AGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18734 | 0.69 | 0.863186 |
Target: 5'- aGCGGGCGGUUGauucuCCAGaggugcgugugcAGGUCCUcGCg -3' miRNA: 3'- aCGUCCGUCAAC-----GGUU------------UCUAGGGuUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18348 | 0.67 | 0.941021 |
Target: 5'- cGCAGucGCGGUcGCCcAAGAUCgUCGGCg -3' miRNA: 3'- aCGUC--CGUCAaCGGuUUCUAG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18024 | 0.7 | 0.838171 |
Target: 5'- gGgGGGC-GUUgcGCCGGuGGUCCCAGCg -3' miRNA: 3'- aCgUCCGuCAA--CGGUUuCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 17063 | 0.67 | 0.945798 |
Target: 5'- gGCGGGCGGUaaacgGCCGGc-GUgCCAGCc -3' miRNA: 3'- aCGUCCGUCAa----CGGUUucUAgGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 17039 | 0.66 | 0.956201 |
Target: 5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3' miRNA: 3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 16787 | 0.7 | 0.824046 |
Target: 5'- cGCAcGGCGGggucaucgggcagGCCAAAGAgCCCAAa -3' miRNA: 3'- aCGU-CCGUCaa-----------CGGUUUCUaGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15894 | 0.68 | 0.906785 |
Target: 5'- cGCGGGCGcc-GCCAuaaucaGUCCCAGCu -3' miRNA: 3'- aCGUCCGUcaaCGGUuuc---UAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15145 | 0.66 | 0.965837 |
Target: 5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3' miRNA: 3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 14684 | 0.71 | 0.801936 |
Target: 5'- gUGCAGGCAGgaGCgAAAGGcgucguUCgCGACg -3' miRNA: 3'- -ACGUCCGUCaaCGgUUUCU------AGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 14541 | 0.67 | 0.930675 |
Target: 5'- cUGCccGCGGUgccGCCGuAGAUgCCGACg -3' miRNA: 3'- -ACGucCGUCAa--CGGUuUCUAgGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 11787 | 0.7 | 0.829403 |
Target: 5'- gGCGGGCAGUggcGCUuucGA-CCCGGCg -3' miRNA: 3'- aCGUCCGUCAa--CGGuuuCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 9931 | 0.7 | 0.820435 |
Target: 5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3' miRNA: 3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 9740 | 0.68 | 0.913156 |
Target: 5'- cGCcgGGGCAGUcGCCGucGGUCCaccuCGACc -3' miRNA: 3'- aCG--UCCGUCAaCGGUuuCUAGG----GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 7746 | 0.75 | 0.593174 |
Target: 5'- cGgAGGCGGcgGCCAGGGcaagCCCGACg -3' miRNA: 3'- aCgUCCGUCaaCGGUUUCua--GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 7418 | 0.68 | 0.919262 |
Target: 5'- gGCAcgcGGCGGcUUGCCAAGGcgcaGUCgCUAGCg -3' miRNA: 3'- aCGU---CCGUC-AACGGUUUC----UAG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 6871 | 0.67 | 0.930675 |
Target: 5'- cGCGGGUAGggccUUGCCGAGGAgcagugCgUCGGCg -3' miRNA: 3'- aCGUCCGUC----AACGGUUUCUa-----G-GGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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