miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 133925 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 48201 0.66 0.958572
Target:  5'- cGCcGGCGGccaggGCCGAGGAgCgCAGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUUUCUaGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18024 0.7 0.838171
Target:  5'- gGgGGGC-GUUgcGCCGGuGGUCCCAGCg -3'
miRNA:   3'- aCgUCCGuCAA--CGGUUuCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 54245 0.68 0.900152
Target:  5'- cGUGGGCAGcgcUGCgGuGGcgCCCGACg -3'
miRNA:   3'- aCGUCCGUCa--ACGgUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22281 0.68 0.913156
Target:  5'- cGUAGGCAGc-GCCGccGAggCCGACa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 7418 0.68 0.919262
Target:  5'- gGCAcgcGGCGGcUUGCCAAGGcgcaGUCgCUAGCg -3'
miRNA:   3'- aCGU---CCGUC-AACGGUUUC----UAG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 126780 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 78371 0.66 0.961226
Target:  5'- gGCGGGCGGgcaaucgcggcgcaUgGCCGAGGAcCCCGccGCu -3'
miRNA:   3'- aCGUCCGUC--------------AaCGGUUUCUaGGGU--UG- -5'
6367 3' -52.1 NC_001847.1 + 31108 0.66 0.969111
Target:  5'- gGCAGcGCGGUggcaUGCCuucGGUCCUcGCu -3'
miRNA:   3'- aCGUC-CGUCA----ACGGuuuCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 22601 0.66 0.958572
Target:  5'- gUGCuucucGGCAGUcaucaggGCCAAAGGaaaaucggUCCCAGg -3'
miRNA:   3'- -ACGu----CCGUCAa------CGGUUUCU--------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 4208 0.66 0.954569
Target:  5'- cGCAGGCA---GCCAAAGcccugcgcgGUgCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGUUUC---------UAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 17063 0.67 0.945798
Target:  5'- gGCGGGCGGUaaacgGCCGGc-GUgCCAGCc -3'
miRNA:   3'- aCGUCCGUCAa----CGGUUucUAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 116761 0.67 0.940529
Target:  5'- cGCAGGCgAGgacGCCGAGGcAUCgggcccgCCGACg -3'
miRNA:   3'- aCGUCCG-UCaa-CGGUUUC-UAG-------GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 76219 0.67 0.930675
Target:  5'- aGCAGcGCGcgUGCCGAccucGUCCCGACc -3'
miRNA:   3'- aCGUC-CGUcaACGGUUuc--UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 63138 0.66 0.969111
Target:  5'- aGC-GGCuGUgGCaccGGAUCCCGGCg -3'
miRNA:   3'- aCGuCCGuCAaCGguuUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 31427 0.68 0.919262
Target:  5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 51531 0.68 0.919262
Target:  5'- gGCAGGCGGggGC---GGcgCCCAGg -3'
miRNA:   3'- aCGUCCGUCaaCGguuUCuaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 15894 0.68 0.906785
Target:  5'- cGCGGGCGcc-GCCAuaaucaGUCCCAGCu -3'
miRNA:   3'- aCGUCCGUcaaCGGUuuc---UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 49842 0.67 0.950312
Target:  5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3'
miRNA:   3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5'
6367 3' -52.1 NC_001847.1 + 32212 0.67 0.950312
Target:  5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3'
miRNA:   3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.