Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 68982 | 0.67 | 0.930675 |
Target: 5'- cGCGGGCAcg-GCCG-AGAgcacgUCCAGCa -3' miRNA: 3'- aCGUCCGUcaaCGGUuUCUa----GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 68857 | 0.67 | 0.938029 |
Target: 5'- cGCgAGGCGGcggcgugcgccggGCCGAAGAggccuccccggCCCAGCa -3' miRNA: 3'- aCG-UCCGUCaa-----------CGGUUUCUa----------GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18348 | 0.67 | 0.941021 |
Target: 5'- cGCAGucGCGGUcGCCcAAGAUCgUCGGCg -3' miRNA: 3'- aCGUC--CGUCAaCGGuUUCUAG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 90493 | 0.67 | 0.945798 |
Target: 5'- gUGCAGGCGGggcagcaGCCuccGAUgCCCAGa -3' miRNA: 3'- -ACGUCCGUCaa-----CGGuuuCUA-GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 57664 | 0.67 | 0.945798 |
Target: 5'- gGCcGGCGGgccggGCCG-GGcgCCCGGCg -3' miRNA: 3'- aCGuCCGUCaa---CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 54272 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCGuGcUGCCGGAcGGcCUCGACg -3' miRNA: 3'- aCGUCCGU-CaACGGUUU-CUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 80236 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCcacGUUGCC--GGGUCgaCGGCg -3' miRNA: 3'- aCGUCCGu--CAACGGuuUCUAGg-GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 32212 | 0.67 | 0.950312 |
Target: 5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3' miRNA: 3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 49842 | 0.67 | 0.950312 |
Target: 5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3' miRNA: 3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 9931 | 0.7 | 0.820435 |
Target: 5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3' miRNA: 3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 81982 | 0.7 | 0.820435 |
Target: 5'- cGCGGGCGG-UGCuCGGAGAcUUCAGCu -3' miRNA: 3'- aCGUCCGUCaACG-GUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 4324 | 0.7 | 0.829403 |
Target: 5'- cUGCGGGUAGUgcuccGCCAuguAGggCgCCAGCu -3' miRNA: 3'- -ACGUCCGUCAa----CGGUu--UCuaG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 11787 | 0.7 | 0.829403 |
Target: 5'- gGCGGGCAGUggcGCUuucGA-CCCGGCg -3' miRNA: 3'- aCGUCCGUCAa--CGGuuuCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 102547 | 0.71 | 0.76296 |
Target: 5'- -cCAGGCAGaUGCagcacGAUCCCAGCu -3' miRNA: 3'- acGUCCGUCaACGguuu-CUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 101007 | 0.73 | 0.70083 |
Target: 5'- cGCGgcGGCAGUuacUGCCGccgccgcggccGGGGUCCCAAUu -3' miRNA: 3'- aCGU--CCGUCA---ACGGU-----------UUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 118140 | 0.73 | 0.679487 |
Target: 5'- cUGCugaucGGCGccGUUGCCAAGGAcgUCCUGACg -3' miRNA: 3'- -ACGu----CCGU--CAACGGUUUCU--AGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 60193 | 0.73 | 0.657971 |
Target: 5'- uUGCGGGCAGUUgaugacGCCGAcGAaaaacagCCCGGCg -3' miRNA: 3'- -ACGUCCGUCAA------CGGUUuCUa------GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 47597 | 0.74 | 0.625548 |
Target: 5'- gGCcGGCGGcagGUCGcAGGAUCCCAGCg -3' miRNA: 3'- aCGuCCGUCaa-CGGU-UUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 41820 | 0.74 | 0.603944 |
Target: 5'- cGCGGGCGGgcGgCGcGGGUCCCAGg -3' miRNA: 3'- aCGUCCGUCaaCgGUuUCUAGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 29506 | 0.66 | 0.972155 |
Target: 5'- cGCGGGCGGcgcuucgGCCGcAGAgcucgCCCGcGCg -3' miRNA: 3'- aCGUCCGUCaa-----CGGUuUCUa----GGGU-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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