miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 115083 0.66 0.958572
Target:  5'- cGCAGGCAGcgagcgcauuuUUGCCc--GcgCCCAGg -3'
miRNA:   3'- aCGUCCGUC-----------AACGGuuuCuaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 103920 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 132935 0.66 0.958572
Target:  5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3'
miRNA:   3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 30122 0.66 0.958572
Target:  5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3'
miRNA:   3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 48201 0.66 0.958572
Target:  5'- cGCcGGCGGccaggGCCGAGGAgCgCAGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUUUCUaGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 17039 0.66 0.956201
Target:  5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3'
miRNA:   3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 26999 0.66 0.954569
Target:  5'- gGCGGcGCGGUUGCCGua---CUCGGCg -3'
miRNA:   3'- aCGUC-CGUCAACGGUuucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 4208 0.66 0.954569
Target:  5'- cGCAGGCA---GCCAAAGcccugcgcgGUgCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGUUUC---------UAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 25128 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 127941 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 135025 0.67 0.950312
Target:  5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3'
miRNA:   3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 49842 0.67 0.950312
Target:  5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3'
miRNA:   3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5'
6367 3' -52.1 NC_001847.1 + 85208 0.67 0.950312
Target:  5'- gGCAgcccGGCGG-UGCaAAAGAgCCCGACg -3'
miRNA:   3'- aCGU----CCGUCaACGgUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 32212 0.67 0.950312
Target:  5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3'
miRNA:   3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 59499 0.67 0.950312
Target:  5'- gGCAGGgGGUgcGCCGAGGccgCaCCGGCu -3'
miRNA:   3'- aCGUCCgUCAa-CGGUUUCua-G-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 17063 0.67 0.945798
Target:  5'- gGCGGGCGGUaaacgGCCGGc-GUgCCAGCc -3'
miRNA:   3'- aCGUCCGUCAa----CGGUUucUAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 54272 0.67 0.945798
Target:  5'- cGCGGGCGuGcUGCCGGAcGGcCUCGACg -3'
miRNA:   3'- aCGUCCGU-CaACGGUUU-CUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 57664 0.67 0.945798
Target:  5'- gGCcGGCGGgccggGCCG-GGcgCCCGGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 90493 0.67 0.945798
Target:  5'- gUGCAGGCGGggcagcaGCCuccGAUgCCCAGa -3'
miRNA:   3'- -ACGUCCGUCaa-----CGGuuuCUA-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 36243 0.67 0.945798
Target:  5'- cGCAGGU---UGCCGA-GcUCCCGGCc -3'
miRNA:   3'- aCGUCCGucaACGGUUuCuAGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.