Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 5' | -54.8 | NC_001847.1 | + | 81331 | 0.66 | 0.921081 |
Target: 5'- ----cCGCu--CCGGCGCGCCaGggGg -3' miRNA: 3'- cauaaGCGuauGGCCGCGCGGgCaaC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 7941 | 0.66 | 0.921081 |
Target: 5'- --uUUUGCAgcUugCGGCGUaGCCCGg-- -3' miRNA: 3'- cauAAGCGU--AugGCCGCG-CGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 25310 | 0.66 | 0.921081 |
Target: 5'- ---cUCGCcgACgagGGCGCGCCCa--- -3' miRNA: 3'- cauaAGCGuaUGg--CCGCGCGGGcaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 93759 | 0.66 | 0.921081 |
Target: 5'- ----gCGCGgcUGCCGGCGgCGgCCCGg-- -3' miRNA: 3'- cauaaGCGU--AUGGCCGC-GC-GGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 96579 | 0.66 | 0.921081 |
Target: 5'- ----cCGUGUGCCuGgGCGCCCGgcGa -3' miRNA: 3'- cauaaGCGUAUGGcCgCGCGGGCaaC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 67075 | 0.66 | 0.921081 |
Target: 5'- -cGUUCGCcccGCCgcaGGCGCGCCgCGa-- -3' miRNA: 3'- caUAAGCGua-UGG---CCGCGCGG-GCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 62721 | 0.66 | 0.921081 |
Target: 5'- aUGUUcCGCGUugCGGCcGUGgCCGUc- -3' miRNA: 3'- cAUAA-GCGUAugGCCG-CGCgGGCAac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 30698 | 0.66 | 0.921081 |
Target: 5'- ----aCGUGUACCuGCGCGCCgCGg-- -3' miRNA: 3'- cauaaGCGUAUGGcCGCGCGG-GCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 90700 | 0.66 | 0.921081 |
Target: 5'- ----gCGCGUGCC-GCGCGCCgCGc-- -3' miRNA: 3'- cauaaGCGUAUGGcCGCGCGG-GCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 69137 | 0.66 | 0.921081 |
Target: 5'- ----gCGCGgccGCCguGGCGUGCCCGgcGg -3' miRNA: 3'- cauaaGCGUa--UGG--CCGCGCGGGCaaC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 124439 | 0.66 | 0.920512 |
Target: 5'- ----gCGCuugGCCGGCGCgggccgcGCCCGg-- -3' miRNA: 3'- cauaaGCGua-UGGCCGCG-------CGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 21626 | 0.66 | 0.920512 |
Target: 5'- ----gCGCuugGCCGGCGCgggccgcGCCCGg-- -3' miRNA: 3'- cauaaGCGua-UGGCCGCG-------CGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 21295 | 0.66 | 0.919941 |
Target: 5'- ----cCGCGgcauccacggggACCGGCGCGCCaCGcgGg -3' miRNA: 3'- cauaaGCGUa-----------UGGCCGCGCGG-GCaaC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 41931 | 0.66 | 0.919367 |
Target: 5'- cGUGUUCG-AUACCuggaGGCGCacgcugcagaugucGCUCGUUGa -3' miRNA: 3'- -CAUAAGCgUAUGG----CCGCG--------------CGGGCAAC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 102083 | 0.66 | 0.915281 |
Target: 5'- ----gCGCGgGCCGcGCGCGaCCCGg-- -3' miRNA: 3'- cauaaGCGUaUGGC-CGCGC-GGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 61891 | 0.66 | 0.915281 |
Target: 5'- cGUGcgCGCAcgGCCucgaGCGCGCCCGc-- -3' miRNA: 3'- -CAUaaGCGUa-UGGc---CGCGCGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 119608 | 0.66 | 0.915281 |
Target: 5'- ----gCGCGcACCGGCGCcagcaGCCCGc-- -3' miRNA: 3'- cauaaGCGUaUGGCCGCG-----CGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 61859 | 0.66 | 0.915281 |
Target: 5'- cGUAggccgCGCcUGCCGGCGC-CCgCGggGg -3' miRNA: 3'- -CAUaa---GCGuAUGGCCGCGcGG-GCaaC- -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 52258 | 0.66 | 0.915281 |
Target: 5'- ----cCGCGgcuugGCugCGGCGCGCCCGc-- -3' miRNA: 3'- cauaaGCGUa----UG--GCCGCGCGGGCaac -5' |
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6367 | 5' | -54.8 | NC_001847.1 | + | 14061 | 0.66 | 0.914688 |
Target: 5'- -gGUUCGCG-GCCGGUGCuugggccGCUCGUg- -3' miRNA: 3'- caUAAGCGUaUGGCCGCG-------CGGGCAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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