miRNA display CGI


Results 61 - 80 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 4301 0.66 0.792864
Target:  5'- cCUCGgcuUCGAUGgCGGCGGCUaugacggccgcuucgGCCGCGGc -3'
miRNA:   3'- -GAGC---GGUUGCaGCUGUCGG---------------CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 97918 0.66 0.789328
Target:  5'- -cCGCCGgguCGUCcGC-GCCGCCGCc- -3'
miRNA:   3'- gaGCGGUu--GCAGcUGuCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 26720 0.66 0.789328
Target:  5'- gUCGCCAc---CGACuguaccuCCGCCGCGGc -3'
miRNA:   3'- gAGCGGUugcaGCUGuc-----GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 45142 0.66 0.789328
Target:  5'- -gCGCCuucuGCGggguGCAGCC-CCGCGGc -3'
miRNA:   3'- gaGCGGu---UGCagc-UGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 62126 0.66 0.78844
Target:  5'- gUUGCCcaggucugugagcGGCGUgCGcAUGGCCGCgGCGGc -3'
miRNA:   3'- gAGCGG-------------UUGCA-GC-UGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 87563 0.66 0.780394
Target:  5'- -cCGCCGgccuuccucggcGCGUgCG-CGGCCGCCG-GGc -3'
miRNA:   3'- gaGCGGU------------UGCA-GCuGUCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 4638 0.66 0.780394
Target:  5'- -cCGCCGGCGcUCGcgcgccuCAGCCcgacgcGCCGCGu -3'
miRNA:   3'- gaGCGGUUGC-AGCu------GUCGG------CGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 116958 0.66 0.780394
Target:  5'- cCUCGCCGcGCGUCcGCcaugGGCCcGCUGgGGc -3'
miRNA:   3'- -GAGCGGU-UGCAGcUG----UCGG-CGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 97327 0.66 0.780394
Target:  5'- -gCGUCGGCGUCG-CGcCCGCC-CGGc -3'
miRNA:   3'- gaGCGGUUGCAGCuGUcGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 71186 0.66 0.780394
Target:  5'- gUCGCgCAGCGcCGGC-GCCGgCGCc- -3'
miRNA:   3'- gAGCG-GUUGCaGCUGuCGGCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 53603 0.66 0.789328
Target:  5'- --gGCCGGCGagcuCGGCCGCCGaaCGGa -3'
miRNA:   3'- gagCGGUUGCagcuGUCGGCGGC--GCC- -5'
6368 3' -59.3 NC_001847.1 + 67982 0.66 0.789328
Target:  5'- gUCGaCCGGCGgcuuggggCGGCcgguauuacGCCGCCGuCGGa -3'
miRNA:   3'- gAGC-GGUUGCa-------GCUGu--------CGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 14440 0.66 0.789328
Target:  5'- cCUCGaCGGCGcCGGgGugcGCgGCCGCGGc -3'
miRNA:   3'- -GAGCgGUUGCaGCUgU---CGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 125521 0.66 0.789328
Target:  5'- --gGCCGGCG-CGGCGGCgGgCGCa- -3'
miRNA:   3'- gagCGGUUGCaGCUGUCGgCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 74429 0.66 0.789328
Target:  5'- gUCGUgGAgGUCGugGCGGCgcacgaCGCCGUGGc -3'
miRNA:   3'- gAGCGgUUgCAGC--UGUCG------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 67633 0.66 0.789328
Target:  5'- -gCGCCGGCGgaGACGGCgGCgGCu- -3'
miRNA:   3'- gaGCGGUUGCagCUGUCGgCGgCGcc -5'
6368 3' -59.3 NC_001847.1 + 59581 0.66 0.789328
Target:  5'- uUUGCCGGCGcUCacgGGCAGCUcgGCCGCc- -3'
miRNA:   3'- gAGCGGUUGC-AG---CUGUCGG--CGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 2098 0.66 0.789328
Target:  5'- --gGCCcGCG-CGGCGGCgGgCCGCGa -3'
miRNA:   3'- gagCGGuUGCaGCUGUCGgC-GGCGCc -5'
6368 3' -59.3 NC_001847.1 + 101431 0.66 0.789328
Target:  5'- gCUCccCCAGC-UCGGCcacgcGCCGCCGCGc -3'
miRNA:   3'- -GAGc-GGUUGcAGCUGu----CGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 100092 0.66 0.789328
Target:  5'- --gGCgAACGUCaGCAGCCccGUCGCGa -3'
miRNA:   3'- gagCGgUUGCAGcUGUCGG--CGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.