Results 81 - 100 of 877 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6368 | 3' | -59.3 | NC_001847.1 | + | 105836 | 0.66 | 0.780394 |
Target: 5'- gCUCGCU--UGUCcGCGGCCGCgGCc- -3' miRNA: 3'- -GAGCGGuuGCAGcUGUCGGCGgCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 103790 | 0.66 | 0.780394 |
Target: 5'- gCUCGCCGGCGgcgUG-UAGaaGCCGCa- -3' miRNA: 3'- -GAGCGGUUGCa--GCuGUCggCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 96835 | 0.66 | 0.780394 |
Target: 5'- -gCGCgGGCGUUGGCuacacgguuGCCGCUGCc- -3' miRNA: 3'- gaGCGgUUGCAGCUGu--------CGGCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 81234 | 0.66 | 0.780394 |
Target: 5'- gUCGCCucCGggCGG-GGCCGUCGCGa -3' miRNA: 3'- gAGCGGuuGCa-GCUgUCGGCGGCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 50090 | 0.66 | 0.780394 |
Target: 5'- -gCGCCccuGAUGcUCGGcCAGCUGCUGgGGg -3' miRNA: 3'- gaGCGG---UUGC-AGCU-GUCGGCGGCgCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 28497 | 0.66 | 0.780394 |
Target: 5'- -aCGCCuucuggcgaGGCGUggccCGGCAGCgCGCCGCc- -3' miRNA: 3'- gaGCGG---------UUGCA----GCUGUCG-GCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 82123 | 0.66 | 0.780394 |
Target: 5'- --gGCCcgAGCG-CGcaGCGGCCGCCGCu- -3' miRNA: 3'- gagCGG--UUGCaGC--UGUCGGCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 71186 | 0.66 | 0.780394 |
Target: 5'- gUCGCgCAGCGcCGGC-GCCGgCGCc- -3' miRNA: 3'- gAGCG-GUUGCaGCUGuCGGCgGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 97327 | 0.66 | 0.780394 |
Target: 5'- -gCGUCGGCGUCG-CGcCCGCC-CGGc -3' miRNA: 3'- gaGCGGUUGCAGCuGUcGGCGGcGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 116958 | 0.66 | 0.780394 |
Target: 5'- cCUCGCCGcGCGUCcGCcaugGGCCcGCUGgGGc -3' miRNA: 3'- -GAGCGGU-UGCAGcUG----UCGG-CGGCgCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 2098 | 0.66 | 0.789328 |
Target: 5'- --gGCCcGCG-CGGCGGCgGgCCGCGa -3' miRNA: 3'- gagCGGuUGCaGCUGUCGgC-GGCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 101431 | 0.66 | 0.789328 |
Target: 5'- gCUCccCCAGC-UCGGCcacgcGCCGCCGCGc -3' miRNA: 3'- -GAGc-GGUUGcAGCUGu----CGGCGGCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 100092 | 0.66 | 0.789328 |
Target: 5'- --gGCgAACGUCaGCAGCCccGUCGCGa -3' miRNA: 3'- gagCGgUUGCAGcUGUCGG--CGGCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 67982 | 0.66 | 0.789328 |
Target: 5'- gUCGaCCGGCGgcuuggggCGGCcgguauuacGCCGCCGuCGGa -3' miRNA: 3'- gAGC-GGUUGCa-------GCUGu--------CGGCGGC-GCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 53603 | 0.66 | 0.789328 |
Target: 5'- --gGCCGGCGagcuCGGCCGCCGaaCGGa -3' miRNA: 3'- gagCGGUUGCagcuGUCGGCGGC--GCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 26720 | 0.66 | 0.789328 |
Target: 5'- gUCGCCAc---CGACuguaccuCCGCCGCGGc -3' miRNA: 3'- gAGCGGUugcaGCUGuc-----GGCGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 45142 | 0.66 | 0.789328 |
Target: 5'- -gCGCCuucuGCGggguGCAGCC-CCGCGGc -3' miRNA: 3'- gaGCGGu---UGCagc-UGUCGGcGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 62126 | 0.66 | 0.78844 |
Target: 5'- gUUGCCcaggucugugagcGGCGUgCGcAUGGCCGCgGCGGc -3' miRNA: 3'- gAGCGG-------------UUGCA-GC-UGUCGGCGgCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 87563 | 0.66 | 0.780394 |
Target: 5'- -cCGCCGgccuuccucggcGCGUgCG-CGGCCGCCG-GGc -3' miRNA: 3'- gaGCGGU------------UGCA-GCuGUCGGCGGCgCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 4638 | 0.66 | 0.780394 |
Target: 5'- -cCGCCGGCGcUCGcgcgccuCAGCCcgacgcGCCGCGu -3' miRNA: 3'- gaGCGGUUGC-AGCu------GUCGG------CGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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