miRNA display CGI


Results 41 - 60 of 877 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 3192 0.76 0.257023
Target:  5'- uCUCGCCGcCGUCGccgccaucgccggcGCAcgugccuccgcGCCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCAGC--------------UGU-----------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 62104 0.76 0.258818
Target:  5'- uUCGCCAGCaGguuguccgCGGCcGCUGCCGCGGc -3'
miRNA:   3'- gAGCGGUUG-Ca-------GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 127333 0.76 0.264874
Target:  5'- -gCGCCGAgG-CGGcCGGCUGCCGCGGc -3'
miRNA:   3'- gaGCGGUUgCaGCU-GUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4402 0.76 0.264874
Target:  5'- gUCGCCGcCGUCGAC-GCCGaCgGCGGc -3'
miRNA:   3'- gAGCGGUuGCAGCUGuCGGC-GgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 17654 0.76 0.264874
Target:  5'- --aGCCGACGUCGACgacgucGGCgGCuCGCGGu -3'
miRNA:   3'- gagCGGUUGCAGCUG------UCGgCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 100996 0.76 0.264874
Target:  5'- cCUCGCgCAGCGcgcucgccgCGGCGGCCaCCGCGGc -3'
miRNA:   3'- -GAGCG-GUUGCa--------GCUGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 108336 0.76 0.271045
Target:  5'- gCUgGCCAGCGUC-ACGGCCGUCgucuGCGGc -3'
miRNA:   3'- -GAgCGGUUGCAGcUGUCGGCGG----CGCC- -5'
6368 3' -59.3 NC_001847.1 + 94201 0.76 0.271045
Target:  5'- gCUgGCCAugGUCGACcuGCgGCgGCGGc -3'
miRNA:   3'- -GAgCGGUugCAGCUGu-CGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 105748 0.76 0.271669
Target:  5'- -cCGCCAGCGcggccgccuccagcgCGGCGGCCGCCucgGCGGc -3'
miRNA:   3'- gaGCGGUUGCa--------------GCUGUCGGCGG---CGCC- -5'
6368 3' -59.3 NC_001847.1 + 98967 0.76 0.276698
Target:  5'- cCUCGCCGcgcaccgccgcaaGCGUUGccuGCAGCCGCUGCaGGc -3'
miRNA:   3'- -GAGCGGU-------------UGCAGC---UGUCGGCGGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 47696 0.76 0.277332
Target:  5'- gUCcUCGGCGUUGGCGGCCGCCG-GGa -3'
miRNA:   3'- gAGcGGUUGCAGCUGUCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 45258 0.76 0.277332
Target:  5'- -cCGCCGGCGUgagcgCGGCgaAGcCCGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCA-----GCUG--UC-GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2574 0.76 0.277332
Target:  5'- -gCGCgGGCGccugCG-CGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGgUUGCa---GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 88937 0.76 0.277332
Target:  5'- --gGCCGGCccggCGGCGGCCGCCGcCGGc -3'
miRNA:   3'- gagCGGUUGca--GCUGUCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 66348 0.75 0.283734
Target:  5'- -cCGUCGGCccgcUCGcGCGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGc---AGC-UGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 31411 0.75 0.283734
Target:  5'- uUCGUgGACGccgUCuGGCAGCCGCgGCGGa -3'
miRNA:   3'- gAGCGgUUGC---AG-CUGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1097 0.75 0.283734
Target:  5'- -gCGCCGcggccGCGggCGGC-GCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCa-GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 103910 0.75 0.283734
Target:  5'- -gCGCCGcggccGCGggCGGC-GCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCa-GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 113683 0.75 0.289595
Target:  5'- cCUCGUCGuCGUCGGCuGCCGCguccgcgUGCGGg -3'
miRNA:   3'- -GAGCGGUuGCAGCUGuCGGCG-------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 30396 0.75 0.290252
Target:  5'- -gCGCCGGCGgccCGAgUGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCa--GCU-GUCGGCGGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.